Hg_chrom6_TN10mRNA_11752
Organism: Heterodera glycines Gene Locus: chr6:3922765-3925124 Feature type: polypeptideProtein Sequence
Length: 317
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 1.834 | 0.631 | 0.87 | 1.157 | 1.941 | 0.751 | 1.577 | 0.981 | 0.98 | 1.386 | 1.113 | 1.139 | 1.153 | 0.515 | 1.397 | 0.827 | 0.574 | 0.971 | 0.371 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11086
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-26
|
0.951
|
0.993
|
0.000
|
0.000
|
0.415
|
0.172
|
0.004
|
0.702
|
0.079
|
0.238
|
0.136
|
0.004
|
0.066
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010320
|
1.000
|
1.000
|
Hsc_gene_18037.t1
|
— | — | — | — |
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003729|GO:0046872
|
— |
IPR000571+219-252_219-253_262-289_264-288+|IPR036855+259-293+|IPR045877+84-315+
|
SM00356+219-252_264-288+
|
— | — |
PTHR12547+84-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-232;284-317
|
2.000
|
1-110;233-283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
35272.610
|
8.308
|
9.000
|
25.237
|
9.779
|
55.521
|
44.479
|
14.826
|
10.410
|
50.473
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1226.608
|
4.137
|
289.965
|
271.536
|
65.754
|
11.952
|
12.155
|
20.500
|
1556.682
|
3945.401
|
2921.664
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.904
|
5.901
|
— |
-2.078
|
-2.447
|
— | — | — | — | — |
-2.759
|
— | — |