SCN Proteipedia

Hg_chrom6_TN10mRNA_11754

Organism: Heterodera glycines Gene Locus: chr6:3932322-3954923 Feature type: polypeptide

Protein Sequence

Length: 2,976

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.071	1.586	1.014	0.487	1.607	1.198	0.708	1.159	1.053	1.094	1.252	1.245	1.017	0.775	0.713	1.013	0.914	0.703	0.853	0.465	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11088	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	0.989

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KKRP,KRRK,KRVK,KRKKR,KKLLHVGNEILKRAKL,RKCVKEQQLEEEKQKEKKA,KESAKKNKMDKERMDNRAKTFAKEQKPKNTKKRANEWNAEKANK	—	—	—	—	—	—	0.000	—	—	0.364	0.347	0.019	0.454	0.169	0.077	0.084	0.022	0.151	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002305	2.000	2.000	Hsc_gene_18049.t1;Hsc_gene_23685.t1	—	—	Q80U87.2 Ubiquitin carboxyl-terminal hydrolase 8 [Mus musculus]	KAI1731508.1 ubiquitin carboxyl-terminal hydrolase domain-containing protein [Ditylenchus destructor]	No	0.110

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004843\|GO:0005515\|GO:0005524\|GO:0016020\|GO:0016579\|GO:0017038	GO:0008150_0.924\|GO:0005575_0.807\|GO:0110165_0.802\|GO:0003674_0.800\|GO:0009987_0.729\|GO:0005622_0.710\|GO:0008152_0.701\|GO:0016020_0.686\|GO:0043170_0.669\|GO:0003824_0.659\|GO:0044238_0.658\|GO:0065007_0.658\|GO:0050789_0.641\|GO:0016787_0.626\|GO:0140096_0.617\|GO:0008233_0.591\|GO:0043226_0.590\|GO:0019783_0.574\|GO:0101005_0.574\|GO:0050794_0.568\|GO:0043229_0.565\|GO:0019538_0.558\|GO:0008234_0.524\|GO:0004843_0.520\|GO:0043227_0.517	IPR001394+115-437+\|IPR011115+1242-1306+\|IPR011990+1867-1952+\|IPR014018+1243-1773+\|IPR018200+116-131_380-397+\|IPR027417+933-1115_1241-1367_1242-1747_1598-1779_1607-1746+\|IPR028889+115-440+\|IPR038765+114-438+\|IPR047002+2719-2855+\|IPR050185+93-440+	—	PF00443+115-437+Ubiquitin_carboxyl-terminal_hydrolase\|PF07517+1242-1306+SecA_DEAD-like_domain	—	PTHR21646+93-440+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-85;496-564;1103-1255;1304-1351;1408-1521;2055-2181;2575-2976	6.000	86-495;565-1102;1256-1303;1352-1407;1522-2054;2182-2574	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.512	330134.610	5.092	-68.500	29.301	8.669	53.461	46.539	14.079	15.222	50.302

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	291.650	238.547	404.353	221.077	183.652	149.219	263.081	37.842	1.028	713.533	408.174

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.529	-0.247	-0.760	-0.299	-0.286	0.827	-2.087	2.940	-9.265	7.657	—	—	—

No JSON data available for plots.

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