Hg_chrom6_TN10mRNA_11756
Organism: Heterodera glycines Gene Locus: chr6:3961096-3962970 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 0.996 | 0.389 | 0.949 | 0.357 | 1.019 | 0.328 | 1.682 | 2.107 | 1.405 | 0.649 | 2.159 | 2.124 | 0.588 | 1.311 | 1.048 | 0.551 | 1.158 | 1.176 | 1.439 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
73-99
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.143
|
0.096
|
0.020
|
0.116
|
0.264
|
0.209
|
0.196
|
0.015
|
0.707
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002307
|
2.000
|
2.000
|
Hsc_gene_7563.t1;Hsc_gene_7563.t2
|
Hsc_gene_18034.t2;Hsc_gene_7563.t1;Hsc_gene_7563.t2;Hsc_gene_7563.t3
|
— | — |
KAI3414130.1 hypothetical protein GPALN_011591 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
37879.010
|
10.156
|
26.500
|
18.349
|
17.431
|
37.309
|
62.691
|
14.067
|
4.281
|
42.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
33.718
|
7.007
|
9.327
|
3.761
|
5.634
|
8.001
|
19.474
|
8.610
|
0.000
|
124.337
|
71.050
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.209
|
— | — |
1.295
|
— |
1.322
|
-7.718
|
— | — | — | — |
No JSON data available for plots.