Hg_chrom6_TN10mRNA_11757
Organism: Heterodera glycines Gene Locus: chr6:3965754-3969105 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.477 | 0.909 | 1.244 | 0.562 | 0.923 | 1.837 | 0.582 | 1.466 | 0.651 | 0.924 | 0.987 | 1.724 | 1.086 | 1.253 | 0.864 | 0.838 | 1.228 | 0.691 | 1.002 | 0.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11091
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.216
|
0.142
|
0.004
|
0.640
|
0.227
|
0.539
|
0.627
|
0.142
|
0.315
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010321
|
1.000
|
1.000
|
Hsc_gene_18033.t1
|
Hsc_gene_18033.t1
|
— |
Q91VZ6.1 Stromal membrane-associated protein 1 [Mus musculus]
|
KAI1732270.1 putative GTPase activating protein for arf domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0046872
|
GO:0005575_0.799|GO:0110165_0.799|GO:0008150_0.727|GO:0005622_0.651|GO:0003674_0.608|GO:0009987_0.598|GO:0016020_0.583|GO:0005488_0.580|GO:0005737_0.557
|
IPR001164+18-133_18-136_19-130_30-49_49-66_70-91+|IPR037278+18-131+|IPR038508+1-134+|IPR044732+21-123+|IPR051718+9-305+
|
SM00105+18-133+
|
PF01412+19-130+Putative_GTPase_activating_protein_for_Arf
|
G3DSA:1.10.220.150:FF:000009+2-134+stromal_membrane-associated_protein_1_isoform_X1
|
PTHR45705+9-305+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;134-307
|
1.000
|
5-133
|
2iqj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
33751.900
|
6.409
|
-0.500
|
26.059
|
9.446
|
50.489
|
49.511
|
13.681
|
12.378
|
54.397
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1081.892
|
917.439
|
1432.507
|
1069.504
|
1000.499
|
1544.190
|
1502.918
|
707.068
|
1462.808
|
570.873
|
953.131
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.414
|
— |
-0.314
|
-0.128
|
0.640
|
— |
-1.230
|
1.229
|
— | — | — | — | — |
No JSON data available for plots.