SCN Proteipedia

Hg_chrom6_TN10mRNA_11758

Organism: Heterodera glycines Gene Locus: chr6:3970783-3971786 Feature type: polypeptide

Protein Sequence

Length: 244

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.81	1.334	0.671	0.424	1.025	2.627	0.732	0.82	0.729	0.886	0.186	0.964	0.911	2.601	1.506	0.937	0.941	0.683	1.261	0.844	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11092	—	—	2.000	2.000	2.000	2.000	2.000	2.000	2.000	2.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Male	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.001	—	—	0.565	0.160	0.004	0.684	0.142	0.142	0.136	0.037	0.055	0.092

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000495	6.000	1.000	Hsc_gene_7626.t1	Hsc_gene_26301.t3	—	P34477.1 Probable ubiquitin-conjugating enzyme E2 7 [Caenorhabditis elegans]	KAI3412015.1 ubiquitin-conjugating enzyme E2 G1 [Globodera pallida]	No	0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.921\|GO:0005575_0.811\|GO:0110165_0.809\|GO:0003674_0.794\|GO:0008152_0.753\|GO:0043170_0.753\|GO:0044238_0.718\|GO:0005622_0.703\|GO:0019538_0.692\|GO:0009987_0.641\|GO:0003824_0.604\|GO:0140096_0.603\|GO:0016020_0.595\|GO:0016740_0.590\|GO:0016746_0.590\|GO:0004842_0.589\|GO:0016755_0.589\|GO:0019787_0.589\|GO:0043226_0.566\|GO:0005737_0.554\|GO:0009056_0.538\|GO:0043229_0.522\|GO:0065007_0.518\|GO:0009057_0.514\|GO:0043227_0.513\|GO:0050789_0.512	IPR000608+12-173_17-160_22-167+\|IPR016135+13-177_17-170+\|IPR023313+87-102+\|IPR050113+10-172+	SM00212+17-173+	PF00179+22-167+Ubiquitin-conjugating_enzyme	G3DSA:3.10.110.10:FF:000051+11-178+ubiquitin-conjugating_enzyme_E2_R2-like	PTHR24067+10-172+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-7;141-244	1.000	8-140	1pzv_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.885	27318.390	6.107	-1.000	20.082	9.426	48.361	51.639	10.246	9.836	54.098

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	167.818	1.059	0.753	2.115	7.764	113.299	8.629	622.178	0.000	450.779	257.588

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	1.846	3.874	-3.702	2.344	-6.023	-9.617	—	-5.721	—	—

No JSON data available for plots.

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