Hg_chrom6_TN10mRNA_11761
Organism: Heterodera glycines Gene Locus: chr6:3984352-3989095 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.365 | 0.894 | 0.957 | 0.349 | 0.776 | 1.713 | 1.036 | 1.417 | 0.54 | 1.176 | 0.583 | 1.905 | 1.012 | 1.168 | 1.57 | 1.157 | 0.597 | 0.951 | 0.467 | 0.298 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11095
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRGRPKK
|
42-62
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.972
|
0.083
|
0.105
|
0.190
|
0.038
|
0.028
|
0.012
|
0.030
|
0.015
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010322
|
1.000
|
1.000
|
Hsc_gene_7625.t1
|
Hsc_gene_7625.t1;Hsc_gene_7625.t2
|
— |
Q03615.2 Suppressor of activated egl-4 protein 2 [Caenorhabditis elegans]
|
KAF7631137.1 DNTTIP1_dimer domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0005575_0.910|GO:0110165_0.899|GO:0005622_0.821|GO:0016020_0.815|GO:0043226_0.758|GO:0043229_0.755|GO:0043227_0.718|GO:0043231_0.705|GO:0005634_0.641
|
IPR026064+18-466+|IPR041384+67-130+|IPR049121+314-414+
|
— |
PF18192+67-130+DNTTIP1_dimerisation_domain|PF21229+314-414+TdIF1,_C-terminal
|
— |
PTHR23399+18-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;170-303;454-494
|
2.000
|
29-169;304-453
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
53394.340
|
9.602
|
15.000
|
24.291
|
8.097
|
46.559
|
53.441
|
14.372
|
9.919
|
54.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
paleturquoise
|
797.765
|
983.016
|
1244.599
|
1060.004
|
1099.172
|
1320.965
|
854.688
|
1020.532
|
756.443
|
79.275
|
369.490
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.123
|
— |
0.280
|
-0.620
|
-0.477
|
— |
3.120
|
— |
3.924
|
— | — |
No JSON data available for plots.