Hg_chrom6_TN10mRNA_11762
Organism: Heterodera glycines Gene Locus: chr6:3989554-3990497 Feature type: polypeptideProtein Sequence
Length: 119
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.879 | 1.173 | 1.222 | 0.0 | 1.401 | 1.077 | 0.6 | 0.0 | 1.12 | 1.476 | 1.655 | 1.483 | 1.167 | 0.808 | 0.514 | 1.2 | 0.827 | 0.764 | 1.939 | 0.494 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11096
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.609
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|peroxisome
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.451
|
0.394
|
0.049
|
0.719
|
0.334
|
0.309
|
0.371
|
0.886
|
0.147
|
0.308
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010323
|
1.000
|
1.000
|
Hsc_gene_7624.t1
|
Hsc_gene_7624.t1
|
— |
Q20507.2 Acyl-CoA-binding protein homolog 3 [Caenorhabditis elegans]
|
KAI1724348.1 acyl coA binding protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000062
|
GO:0008150_0.806|GO:0005575_0.800|GO:0110165_0.798|GO:0005622_0.726|GO:0005737_0.689|GO:0016020_0.634|GO:0043226_0.633|GO:0043229_0.600|GO:0043227_0.580|GO:0009987_0.545|GO:0043231_0.542|GO:0003674_0.507
|
IPR000582+4-93_5-20_5-84_26-44_49-64_70-87+|IPR014352+3-106+|IPR022408+26-44+|IPR035984+3-89+
|
— |
PF00887+5-84+Acyl_CoA_binding_protein
|
G3DSA:1.20.80.10:FF:000010+3-98+Acyl-CoA-binding_domain-containing_protein_5
|
PTHR23310+2-93+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-119
|
3fp5_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
13394.270
|
4.933
|
-2.000
|
28.571
|
8.403
|
51.261
|
48.739
|
13.445
|
15.126
|
47.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
3185.118
|
313.266
|
1513.414
|
3795.833
|
6717.356
|
7155.157
|
5164.691
|
4061.669
|
324.404
|
2921.067
|
1808.211
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.043
|
3.462
|
1.435
|
0.791
|
— |
-0.460
|
-0.918
|
0.488
|
-3.267
|
— | — | — | — |
No JSON data available for plots.