Hg_chrom6_TN10mRNA_11766
Organism: Heterodera glycines Gene Locus: chr6:4010488-4014037 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.341 | 1.68 | 0.862 | 0.0 | 1.58 | 1.1 | 0.511 | 0.79 | 2.157 | 0.641 | 2.839 | 1.062 | 1.756 | 0.391 | 0.967 | 0.871 | 0.481 | 0.513 | 1.215 | 0.996 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11100
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
PKSKRKL,KRKKRNPWESERKIAKE,RKLGQKQKQKQMREEKDKK,KRSNFSNAEKLEFVKKFEK,KKEKTHGFKYDRIKRKKLE,RKIAKELGVSRVSIMRWRK
|
— | — | — | — | — | — |
0.182
|
— | — |
0.604
|
0.112
|
0.015
|
0.290
|
0.070
|
0.043
|
0.052
|
0.006
|
0.084
|
0.417
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000145
|
12.000
|
1.000
|
Hsc_gene_14377.t1
|
— | — | — |
KAI3412127.1 hypothetical protein GPALN_002169 [Globodera pallida]
|
MBQ5408016
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
40-157
|
2.000
|
1-39;158-443
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
53020.250
|
10.527
|
44.500
|
39.278
|
12.867
|
59.819
|
40.181
|
25.056
|
14.221
|
33.634
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkmagenta
|
395.435
|
0.470
|
14.091
|
31.617
|
4.584
|
0.257
|
1.311
|
0.822
|
122.239
|
1618.417
|
977.198
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.682
|
5.945
|
1.275
|
-2.810
|
-4.170
|
— | — | — |
-3.867
|
— |
-8.062
|
— | — |
No JSON data available for plots.