Hg_chrom6_TN10mRNA_11767
Organism: Heterodera glycines Gene Locus: chr6:4016720-4023300 Feature type: polypeptideProtein Sequence
Length: 1,145
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 1.869 | 0.873 | 0.271 | 2.052 | 1.075 | 0.613 | 2.62 | 1.067 | 0.543 | 1.641 | 1.233 | 0.679 | 0.571 | 1.141 | 1.372 | 0.687 | 0.715 | 0.202 | 0.257 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11101
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
Gland16|KJ825727.1#tn8jg7788.t1
|
Gland16|KJ8257271#tn8jg7788t1
|
— | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
FKVK,KKRK,KRKH,KVKK,RPTKRTR,KKSAQNRNVRKGKKQ,RKDSLVVHRNRRIKD,KKHADTELGQSVKTKRH,KKQSEESWEDDIEKVTKK,KRSGESLRISPKNKFKIKK,ENKKTGKESDTKVKSPKKSPRR
|
— | — | — | — |
1-26
|
— |
0.552
|
— |
0.000
|
0.508
|
0.102
|
0.012
|
0.525
|
0.033
|
0.060
|
0.096
|
0.020
|
0.170
|
0.410
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010325
|
1.000
|
1.000
|
Hsc_gene_7621.t1
|
— | — | — |
QPO14712.1 effector protein GLAND16, partial [Heterodera glycines]
|
WP_322646757
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046417
|
GO:0008150_0.960|GO:0005575_0.932|GO:0110165_0.930|GO:0009987_0.913|GO:0003674_0.870|GO:0008152_0.788|GO:0044237_0.785|GO:0003824_0.689|GO:0044281_0.677|GO:0006082_0.674|GO:0019752_0.674|GO:0043436_0.674|GO:0043648_0.670|GO:0046417_0.670|GO:0004106_0.650|GO:0016853_0.650|GO:0016866_0.650|GO:0042597_0.540|GO:0005488_0.525
|
IPR002701+214-307_228-306_237-303+|IPR008240+231-342+|IPR036263+237-394+|IPR036979+220-400+|IPR051331+229-313+
|
SM00830+228-306+
|
PF01817+237-303+Chorismate_mutase_type_II
|
— |
PTHR38041+229-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-142;356-1145
|
1.000
|
143-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
129346.590
|
7.265
|
22.000
|
38.777
|
8.821
|
64.803
|
35.197
|
21.659
|
17.118
|
47.336
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
4582.071
|
15.000
|
229.386
|
2729.140
|
1340.264
|
298.615
|
428.263
|
172.492
|
6260.779
|
13396.040
|
10338.071
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.704
|
7.370
|
3.682
|
-1.057
|
-2.152
|
— |
-0.910
|
1.460
|
— | — |
-3.190
|
— | — |