Hg_chrom6_TN10mRNA_11768
Organism: Heterodera glycines Gene Locus: chr6:4023676-4024890 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.282 | 1.026 | 0.267 | 0.254 | 2.451 | 1.131 | 0.0 | 1.838 | 0.98 | 1.888 | 0.891 | 2.163 | 1.43 | 0.707 | 1.801 | 0.945 | 0.482 | 0.334 | 1.131 | 0.216 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11102
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.367
|
0.289
|
0.013
|
0.546
|
0.112
|
0.133
|
0.242
|
0.054
|
0.143
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002308
|
2.000
|
2.000
|
Hsc_gene_7619.t1;Hsc_gene_7619.t2
|
Hsc_gene_7619.t1;Hsc_gene_7619.t2
|
F59F5.6
|
Q91Z80.1 Liprin-alpha-4 [Rattus norvegicus]
|
CDW54876.1 Liprin-alpha [Trichuris trichiura]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.932|GO:0110165_0.916|GO:0005622_0.892|GO:0005737_0.826|GO:0008150_0.720|GO:0009987_0.673|GO:0065007_0.642|GO:0050789_0.633|GO:0050794_0.610|GO:0071840_0.554|GO:0016043_0.549|GO:0051179_0.546|GO:0007154_0.537|GO:0023052_0.534|GO:0071944_0.530|GO:0051641_0.529|GO:0008104_0.501|GO:0033036_0.501|GO:0070727_0.501
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
16060.470
|
6.648
|
0.500
|
34.559
|
11.029
|
52.941
|
47.059
|
18.382
|
16.176
|
33.088
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
cyan
|
4.094
|
1.219
|
2.860
|
3.088
|
3.003
|
18.152
|
6.705
|
8.317
|
0.000
|
1.656
|
0.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.602
|
-1.423
|
-1.240
|
— | — | — | — | — | — |
No JSON data available for plots.