Hg_chrom6_TN10mRNA_11769
Organism: Heterodera glycines Gene Locus: chr6:4029481-4031343 Feature type: polypeptideProtein Sequence
Length: 227
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 1.127 | 0.561 | 0.456 | 1.395 | 0.791 | 0.787 | 1.542 | 0.783 | 1.488 | 1.001 | 3.628 | 0.612 | 0.678 | 1.618 | 1.385 | 0.506 | 0.734 | 2.033 | 0.648 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11103
|
— | — |
1.444
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKR,RKRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.531
|
0.132
|
0.004
|
0.587
|
0.195
|
0.161
|
0.186
|
0.008
|
0.388
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004340
|
3.000
|
0.000
|
0.000
|
Hsc_gene_7619.t1;Hsc_gene_7619.t2
|
— |
Q21049.1 Liprin-alpha [Caenorhabditis elegans]
|
KAK5974829.1 PlipriN-alpha [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.892|GO:0110165_0.885|GO:0005622_0.843|GO:0005737_0.761|GO:0008150_0.670|GO:0016020_0.618|GO:0009987_0.615|GO:0065007_0.556|GO:0071944_0.554|GO:0050789_0.546|GO:0043226_0.514
|
IPR001660+50-119_53-115_53-119_135-201_138-199_145-201+|IPR013761+16-140_46-124_135-204_141-214+|IPR029515+19-216+|IPR037620+50-120+
|
SM00454+50-119_135-201+
|
PF00536+53-115_138-199+SAM_domain_(Sterile_alpha_motif)
|
— |
PTHR12587+19-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-36;212-227
|
1.000
|
37-211
|
3tad_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
26014.010
|
9.814
|
10.500
|
29.075
|
10.132
|
49.780
|
50.220
|
17.621
|
11.454
|
43.172
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
cyan
|
32.664
|
51.808
|
72.732
|
50.686
|
30.718
|
38.175
|
31.816
|
49.382
|
1.382
|
19.875
|
11.949
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.414
|
-0.754
|
— | — | — | — | — |
5.527
|
— | — | — |
No JSON data available for plots.