Hg_chrom6_TN10mRNA_11770
Organism: Heterodera glycines Gene Locus: chr6:4035779-4037292 Feature type: polypeptideProtein Sequence
Length: 312
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.708 | 1.491 | 1.049 | 0.221 | 1.015 | 2.712 | 0.649 | 1.122 | 0.997 | 1.299 | 1.02 | 1.697 | 0.623 | 0.616 | 1.504 | 0.778 | 0.788 | 0.971 | 0.986 | 0.66 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11104
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
12-35
|
0.904
|
— | — | — | — |
0.000
|
— | — |
0.538
|
0.316
|
0.010
|
0.425
|
0.118
|
0.189
|
0.131
|
0.115
|
0.161
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004341
|
3.000
|
0.000
|
0.000
|
— | — |
Q13136.1 Liprin-alpha-1 [Homo sapiens]
|
XP_050411248.1 liprin-alpha-1 isoform X3 [Patella vulgata]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.928|GO:0110165_0.926|GO:0005622_0.890|GO:0005737_0.766|GO:0008150_0.726|GO:0009987_0.694|GO:0065007_0.672|GO:0050789_0.662|GO:0016020_0.639|GO:0071944_0.600|GO:0050794_0.575|GO:0043226_0.549|GO:0051179_0.548|GO:0051641_0.531|GO:0071840_0.510|GO:0016043_0.501
|
IPR021109+1-97+|IPR029515+110-192+
|
— | — | — |
PTHR12587+110-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
178-312
|
1.000
|
1-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
35851.600
|
9.776
|
10.500
|
28.205
|
8.013
|
55.449
|
44.551
|
16.346
|
11.859
|
44.231
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
4.264
|
0.605
|
0.000
|
0.130
|
0.156
|
0.000
|
0.000
|
0.268
|
0.000
|
18.219
|
10.411
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.