Hg_chrom6_TN10mRNA_11772
Organism: Heterodera glycines Gene Locus: chr6:4045218-4047794 Feature type: polypeptideProtein Sequence
Length: 548
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 1.358 | 0.962 | 0.378 | 0.973 | 2.152 | 0.63 | 1.46 | 0.933 | 1.184 | 0.912 | 1.717 | 0.71 | 0.702 | 1.154 | 1.564 | 0.778 | 0.968 | 0.842 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11106
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.295
|
0.019
|
0.516
|
0.167
|
0.221
|
0.199
|
0.096
|
0.185
|
0.273
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004341
|
3.000
|
0.000
|
0.000
|
— | — |
Q13136.1 Liprin-alpha-1 [Homo sapiens]
|
XP_050411248.1 liprin-alpha-1 isoform X3 [Patella vulgata]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.950|GO:0110165_0.949|GO:0005622_0.893|GO:0005737_0.750|GO:0008150_0.743|GO:0009987_0.714|GO:0065007_0.698|GO:0050789_0.684|GO:0016020_0.674|GO:0071944_0.658|GO:0050794_0.603|GO:0051179_0.592|GO:0043226_0.563|GO:0005886_0.555|GO:0030054_0.544|GO:0071840_0.539|GO:0016043_0.538|GO:0051641_0.531
|
IPR019103+216-308+|IPR021109+198-326_216-311+|IPR029515+346-428+
|
— |
PF09668+216-308+Aspartyl_protease
|
— |
PTHR12587+346-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;150-203;414-548
|
2.000
|
23-149;204-413
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
61523.110
|
8.253
|
11.000
|
25.730
|
8.759
|
55.657
|
44.343
|
14.599
|
11.131
|
49.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.010
|
0.000
|
0.000
|
0.000
|
0.078
|
0.000
|
0.000
|
0.274
|
0.000
|
4.288
|
2.450
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.