Hg_chrom6_TN10mRNA_11773
Organism: Heterodera glycines Gene Locus: chr6:4048411-4049361 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.332 | 0.947 | 0.539 | 1.562 | 0.801 | 0.93 | 2.083 | 0.81 | 1.337 | 0.947 | 2.757 | 0.868 | 0.501 | 1.594 | 0.967 | 0.427 | 0.868 | 1.603 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11107
|
— | — |
2.667
|
3.000
|
3.000
|
3.000
|
2.000
|
4.000
|
3.000
|
1.000
|
4.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.404
|
0.244
|
0.013
|
0.583
|
0.388
|
0.357
|
0.179
|
0.010
|
0.581
|
0.230
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004340
|
3.000
|
0.000
|
0.000
|
Hsc_gene_7619.t1;Hsc_gene_7619.t2
|
— |
Q21049.1 Liprin-alpha [Caenorhabditis elegans]
|
KHN80607.1 Liprin-alpha, partial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.896|GO:0110165_0.896|GO:0005622_0.837|GO:0005737_0.768|GO:0008150_0.648|GO:0016020_0.602|GO:0009987_0.589|GO:0071944_0.533|GO:0065007_0.507|GO:0043226_0.501
|
IPR001660+4-70_7-68_14-70_91-162_94-126+|IPR013761+1-81_4-73_84-175_85-127+|IPR029515+2-160+
|
SM00454+4-70_91-162+
|
PF00536+7-68+SAM_domain_(Sterile_alpha_motif)
|
— |
PTHR12587+2-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
153-192
|
1.000
|
1-152
|
3tac_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
21966.980
|
7.162
|
3.000
|
32.812
|
10.938
|
51.042
|
48.958
|
18.229
|
14.583
|
44.271
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.