Hg_chrom6_TN10mRNA_11780
Organism: Heterodera glycines Gene Locus: chr6:4090495-4095483 Feature type: polypeptideProtein Sequence
Length: 837
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 1.667 | 0.521 | 0.865 | 1.314 | 1.593 | 0.626 | 0.478 | 1.407 | 0.84 | 1.195 | 1.335 | 1.162 | 1.057 | 0.756 | 1.161 | 1.665 | 0.561 | 0.368 | 0.351 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11114
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.873
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
4-24
|
0.986
|
28-75
|
0.848
|
— | — |
0.001
|
— | — |
0.119
|
0.192
|
0.068
|
0.272
|
0.231
|
0.089
|
0.285
|
0.036
|
0.381
|
0.616
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000595
|
1.000
|
6.000
|
Hsc_gene_7611.t1;Hsc_gene_7611.t2;Hsc_gene_7611.t3;Hsc_gene_7611.t4;Hsc_gene_7611.t5;Hsc_gene_7611.t6
|
Hsc_gene_7611.t1;Hsc_gene_7611.t2;Hsc_gene_7611.t3;Hsc_gene_7611.t4;Hsc_gene_7611.t5;Hsc_gene_7611.t6
|
— | — |
KAI3419166.1 hypothetical protein GPALN_006921 [Globodera pallida]
|
MBL0848787
|
0.730
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
171-227;394-733
|
3.000
|
1-170;228-393;734-837
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
92250.230
|
8.117
|
11.000
|
23.297
|
6.810
|
54.958
|
45.042
|
12.545
|
10.753
|
52.688
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
salmon
|
60.376
|
23.635
|
8.009
|
53.811
|
48.587
|
33.520
|
33.663
|
16.412
|
1.382
|
181.496
|
104.305
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.783
|
1.050
|
2.845
|
— |
-0.520
|
— |
-1.139
|
1.178
|
— |
5.614
|
— | — | — |
No JSON data available for plots.