Hg_chrom6_TN10mRNA_11783
Organism: Heterodera glycines Gene Locus: chr6:4111783-4115095 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 1.746 | 1.101 | 0.501 | 1.453 | 1.614 | 0.778 | 0.726 | 1.022 | 1.145 | 1.247 | 1.567 | 1.547 | 0.652 | 0.544 | 0.969 | 0.675 | 0.88 | 0.931 | 0.641 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11117
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.865
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.493
|
0.119
|
0.022
|
0.688
|
0.317
|
0.306
|
0.101
|
0.056
|
0.124
|
0.216
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010329
|
1.000
|
1.000
|
Hsc_gene_7608.t1
|
Hsc_gene_7608.t1
|
— | — |
KAI3419176.1 Ran-binding protein 9 [Globodera pallida]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.832|GO:0009987_0.651|GO:0005575_0.647|GO:0110165_0.640|GO:0005622_0.610|GO:0005737_0.537|GO:0008152_0.534|GO:0044238_0.527|GO:0044237_0.513|GO:0009058_0.507
|
IPR001870+217-407+|IPR003877+287-406_290-403+|IPR013320+233-407+|IPR043136+228-413+|IPR044736+274-403+|IPR050618+131-403+
|
SM00449+287-406+
|
PF00622+290-403+SPRY_domain
|
— |
PTHR12864+131-403+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-34;117-162
|
2.000
|
35-116;163-413
|
7wug_1
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
46552.350
|
4.731
|
-13.000
|
27.119
|
10.412
|
51.816
|
48.184
|
12.349
|
14.770
|
47.942
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
377.334
|
294.360
|
369.487
|
253.390
|
232.580
|
295.440
|
544.691
|
241.339
|
326.212
|
569.447
|
465.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.354
|
-0.433
|
— |
0.359
|
0.893
|
— |
1.322
|
— | — | — | — | — |
No JSON data available for plots.