Hg_chrom6_TN10mRNA_11784
Organism: Heterodera glycines Gene Locus: chr6:4116646-4121345 Feature type: polypeptideProtein Sequence
Length: 606
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.729 | 1.689 | 1.08 | 0.569 | 1.403 | 1.523 | 0.727 | 0.825 | 1.357 | 1.048 | 1.05 | 1.262 | 1.925 | 0.666 | 0.876 | 0.825 | 0.73 | 0.775 | 1.015 | 0.728 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11118
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.730
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.065
|
0.009
|
0.574
|
0.312
|
0.244
|
0.111
|
0.078
|
0.109
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002310
|
1.000
|
3.000
|
Hsc_gene_7607.t1;Hsc_gene_7607.t2;Hsc_gene_7607.t3
|
— | — |
Q5RBR6.1 SPRY domain-containing protein 3 [Pongo abelii]
|
KAI3421820.1 SPRY domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.946|GO:0009987_0.648|GO:0008152_0.546|GO:0044238_0.531|GO:0044237_0.517|GO:0009058_0.505
|
IPR001870+229-419_413-600+|IPR003877+297-418_300-416_477-599_480-596+|IPR013320+240-419_439-600+|IPR043136+233-427_435-605+|IPR044736+285-415_463-596+|IPR050618+198-420+
|
SM00449+297-418_477-599+
|
PF00622+300-416_480-596+SPRY_domain
|
— |
PTHR12864+198-420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-80
|
1.000
|
81-606
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.503
|
69258.060
|
4.951
|
-14.000
|
27.228
|
12.376
|
50.660
|
49.340
|
12.871
|
14.356
|
46.040
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
399.819
|
20.483
|
80.768
|
71.510
|
278.642
|
387.266
|
348.732
|
2107.061
|
1.542
|
512.628
|
293.591
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.746
|
1.666
|
— |
1.932
|
0.488
|
— |
2.342
|
-2.453
|
-8.322
|
5.561
|
— | — | — |
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