SCN Proteipedia

Hg_chrom6_TN10mRNA_11785

Organism: Heterodera glycines Gene Locus: chr6:4125480-4132638 Feature type: polypeptide

Protein Sequence

Length: 1,001

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.767	1.58	0.708	0.517	0.866	1.101	0.642	1.648	1.088	1.148	0.999	1.117	1.027	0.941	1.142	1.841	0.852	1.014	0.538	0.441	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11119	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KVKK,RKRRRP,KKGRLMAKEARKFFR,RRADGSPMNARRNRY,KKSSQNQHQNAIRPRKT	—	—	49-76	0.874	—	—	0.000	—	—	0.331	0.207	0.026	0.660	0.172	0.322	0.264	0.065	0.428	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010330	1.000	1.000	Hsc_gene_7605.t1	Hsc_gene_7605.t1	—	Q19469.2 Serine/threonine kinase SAD-1 [Caenorhabditis elegans]	KAI1732340.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.950\|GO:0009987_0.903\|GO:0065007_0.889\|GO:0005575_0.888\|GO:0003674_0.887\|GO:0003824_0.887\|GO:0004672_0.887\|GO:0016301_0.887\|GO:0016740_0.887\|GO:0016772_0.887\|GO:0016773_0.887\|GO:0140096_0.887\|GO:0110165_0.884\|GO:0050789_0.882\|GO:0050794_0.876\|GO:0004674_0.814\|GO:0005622_0.810\|GO:0050896_0.683\|GO:0016020_0.677\|GO:0007154_0.651\|GO:0016043_0.650\|GO:0071840_0.650\|GO:0023052_0.647\|GO:0051716_0.642\|GO:0005488_0.610\|GO:0043226_0.599\|GO:0008152_0.591\|GO:0044237_0.591\|GO:0043170_0.588\|GO:0005737_0.583\|GO:0044238_0.563\|GO:0043229_0.562\|GO:0006793_0.554\|GO:0006796_0.554\|GO:0071944_0.552\|GO:0051179_0.551\|GO:0019538_0.545\|GO:0036211_0.545\|GO:0043412_0.545\|GO:0006468_0.527\|GO:0016310_0.527\|GO:0007165_0.518	IPR000719+81-332+\|IPR008271+199-211+\|IPR011009+78-333+\|IPR017441+87-110+\|IPR048622+361-413_362-404+	SM00220+81-332+	PF00069+81-332+Protein_kinase_domain\|PF21115+362-404+BRSK1/2_UBA_domain\|PF21122+683-782+BRSK1/2_KA1_domain	G3DSA:1.10.510.10:FF:000064+72-417+BR_serine/threonine-protein_kinase_2\|G3DSA:3.30.200.20:FF:000003+65-161+Non-specific_serine/threonine_protein_kinase	PTHR24346+26-876+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	413-654;782-1001	2.000	1-412;655-781	4yom_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.963	110283.730	9.986	47.500	24.575	9.191	53.746	46.254	15.485	9.091	53.846

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	693.168	807.633	1535.962	482.800	161.130	213.430	193.252	887.247	231.057	1253.770	815.464

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.698	-0.879	-1.561	-1.615	0.420	—	1.956	-2.061	-2.550	—	—	—	—

No JSON data available for plots.

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