Hg_chrom6_TN10mRNA_11786
Organism: Heterodera glycines Gene Locus: chr6:4133589-4139618 Feature type: polypeptideProtein Sequence
Length: 839
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 1.247 | 0.693 | 0.658 | 0.715 | 1.406 | 0.525 | 1.669 | 1.112 | 1.659 | 0.65 | 1.262 | 2.152 | 0.963 | 1.046 | 0.783 | 0.762 | 1.192 | 1.192 | 0.771 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11120
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
63-83
|
0.989
|
39-79
|
0.995
|
— | — |
0.000
|
— | — |
0.059
|
0.225
|
0.009
|
0.138
|
0.632
|
0.321
|
0.496
|
0.005
|
0.339
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010331
|
1.000
|
1.000
|
Hsc_gene_7604.t1
|
Hsc_gene_7604.t1
|
— |
Q6GDN2.1 O-acetyltransferase OatA [Staphylococcus aureus subsp. aureus MRSA252]
|
KAH7704216.1 Protein OAC-49 [Aphelenchus avenae]
|
No
|
-0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
— |
IPR002656+4-225+|IPR043968+600-824+|IPR050879+1-822+
|
— |
PF01757+4-225+Acyltransferase_family|PF19040+600-824+SGNH_domain_(fused_to_AT3_domains)
|
— |
PTHR23028+1-822+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-839
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
95775.210
|
8.640
|
25.000
|
20.858
|
15.256
|
41.836
|
58.164
|
12.753
|
8.105
|
46.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
1164.619
|
22.322
|
29.710
|
43.413
|
762.050
|
1535.813
|
66.310
|
15.118
|
6.168
|
4162.559
|
2381.248
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.822
|
0.657
|
4.101
|
1.027
|
-4.524
|
-6.778
|
2.276
|
-9.487
|
— | — | — | — |
No JSON data available for plots.