Hg_chrom6_TN10mRNA_11790
Organism: Heterodera glycines Gene Locus: chr6:4154127-4154860 Feature type: polypeptideProtein Sequence
Length: 87
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.401 | 0.535 | 1.254 | 0.793 | 1.341 | 1.474 | 0.821 | 1.149 | 1.533 | 0.777 | 1.393 | 2.028 | 1.916 | 0.0 | 0.938 | 0.985 | 0.942 | 1.393 | 0.884 | 0.676 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11124
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.457
|
0.462
|
0.220
|
0.600
|
0.161
|
0.211
|
0.145
|
0.022
|
0.128
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004343
|
2.000
|
1.000
|
Hsc_gene_24243.t1
|
— | — |
Q22799.1 Dynein light chain 1, cytoplasmic [Caenorhabditis elegans]
|
KAF7636300.1 Dynein light chain [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005875|GO:0007017|GO:0030286
|
GO:0005575_0.916|GO:0110165_0.908|GO:0005622_0.772|GO:0043226_0.723|GO:0043229_0.717|GO:0008150_0.695|GO:0009987_0.627|GO:0016020_0.607|GO:0005737_0.576|GO:0032991_0.561|GO:0043228_0.554|GO:0043232_0.554|GO:0005856_0.512|GO:0015630_0.512|GO:0043227_0.512
|
IPR001372+1-86_3-86_5-87+|IPR019763+53-67+|IPR037177+1-87_2-87+
|
SM01375+1-86+
|
PF01221+3-86+Dynein_light_chain_type_1
|
G3DSA:3.30.740.10:FF:000006+1-87+Dynein_light_chain
|
PTHR11886+5-87+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-87
|
3rjs_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
10022.480
|
6.454
|
0.000
|
31.034
|
12.644
|
51.724
|
48.276
|
16.092
|
14.943
|
43.678
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
164.382
|
19.344
|
569.719
|
94.295
|
36.853
|
59.762
|
8.512
|
934.759
|
28.670
|
51.451
|
41.688
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.649
|
2.145
|
-2.486
|
-1.391
|
0.713
|
-2.801
|
3.871
|
-6.638
|
— | — | — | — | — |
No JSON data available for plots.