Hg_chrom6_TN10mRNA_11794
Organism: Heterodera glycines Gene Locus: chr6:4164048-4165550 Feature type: polypeptideProtein Sequence
Length: 127
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.549 | 1.282 | 0.716 | 3.53 | 1.181 | 0.808 | 0.656 | 0.787 | 1.225 | 1.17 | 1.074 | 2.316 | 0.875 | 1.06 | 0.643 | 1.125 | 0.774 | 0.835 | 0.0 | 0.926 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11128
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.578
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-27
|
0.963
|
1.000
|
0.000
|
0.000
|
0.164
|
0.256
|
0.025
|
0.545
|
0.292
|
0.232
|
0.155
|
0.329
|
0.149
|
0.933
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010336
|
1.000
|
1.000
|
Hsc_gene_7598.t1
|
Hsc_gene_7598.t1
|
— |
P34576.2 Transmembrane cell adhesion receptor mua-3 [Caenorhabditis elegans]
|
KIH50665.1 EGF-like domain protein, partial [Ancylostoma duodenale]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.908|GO:0110165_0.906|GO:0008150_0.660|GO:0030054_0.603|GO:0009987_0.593|GO:0070161_0.549|GO:0030055_0.540|GO:0030056_0.540|GO:0005622_0.519
|
IPR000152+95-106+|IPR000742+29-66_32-73_77-116_80-125_86-111+
|
SM00181+32-73_80-125+
|
PF00008+86-111+EGF-like_domain
|
— |
PTHR24039+32-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
14071.390
|
6.400
|
0.000
|
22.835
|
7.874
|
44.094
|
55.906
|
11.811
|
11.024
|
53.543
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
384.714
|
15.634
|
687.386
|
372.204
|
708.083
|
1988.557
|
289.003
|
113.184
|
80.968
|
57.128
|
67.345
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.232
|
4.438
|
-0.778
|
0.895
|
1.505
|
-2.773
|
-4.246
|
1.498
|
— | — |
3.770
|
— | — |