Hg_chrom6_TN10mRNA_11795
Organism: Heterodera glycines Gene Locus: chr6:4169313-4171875 Feature type: polypeptideProtein Sequence
Length: 474
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.638 | 1.276 | 0.844 | 0.8 | 0.668 | 1.244 | 0.527 | 1.477 | 1.5 | 1.511 | 0.448 | 1.365 | 2.813 | 0.974 | 0.947 | 1.055 | 0.83 | 0.927 | 1.136 | 0.807 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11129
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-20
|
0.988
|
1.000
|
3.000
|
3.000
|
0.150
|
0.069
|
0.021
|
0.183
|
0.277
|
0.193
|
0.208
|
0.009
|
0.773
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010337
|
1.000
|
1.000
|
Hsc_gene_7595.t1
|
Hsc_gene_7595.t1
|
— | — |
KAF7632089.1 Neur_chan_LBD domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
— |
IPR006201+111-376+|IPR006202+113-241+|IPR036734+99-283_99-288+
|
— |
PF02931+113-241+Neurotransmitter-gated_ion-channel_ligand_binding_domain
|
— |
PTHR18945+111-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-474
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
54478.900
|
6.722
|
2.000
|
19.198
|
17.300
|
41.983
|
58.017
|
10.549
|
8.650
|
45.992
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
743.988
|
192.575
|
17.120
|
8.594
|
557.804
|
4747.946
|
93.222
|
795.407
|
0.000
|
850.198
|
485.827
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.715
|
-4.620
|
-0.887
|
5.990
|
3.106
|
-5.664
|
-2.689
|
-2.949
|
-10.544
|
— | — | — | — |