Hg_chrom6_TN10mRNA_11798
Organism: Heterodera glycines Gene Locus: chr6:4185300-4189677 Feature type: polypeptideProtein Sequence
Length: 454
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 1.434 | 0.841 | 0.911 | 1.432 | 1.638 | 0.708 | 1.211 | 0.881 | 1.339 | 1.235 | 1.166 | 1.652 | 0.89 | 0.764 | 0.975 | 0.758 | 0.701 | 0.339 | 0.648 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11132
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.754
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.634
|
0.059
|
0.013
|
0.502
|
0.378
|
0.246
|
0.082
|
0.020
|
0.082
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010339
|
1.000
|
1.000
|
Hsc_gene_7593.t1
|
Hsc_gene_7593.t1
|
— | — |
KAI3407415.1 Ran-binding protein 10 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.952|GO:0009987_0.651|GO:0065007_0.605|GO:0050789_0.592|GO:0050794_0.562|GO:0005575_0.528|GO:0110165_0.528|GO:0008152_0.503
|
IPR001870+262-449+|IPR003877+328-448_331-446+|IPR013320+275-449+|IPR043136+267-454+|IPR044736+316-445+|IPR050618+150-448+
|
SM00449+328-448+
|
PF00622+331-446+SPRY_domain
|
— |
PTHR12864+150-448+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61
|
1.000
|
62-454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
51287.130
|
6.430
|
-0.500
|
27.533
|
11.013
|
51.542
|
48.458
|
14.317
|
13.216
|
46.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
509.202
|
699.951
|
554.866
|
492.440
|
408.573
|
745.325
|
712.650
|
1272.192
|
95.197
|
324.111
|
226.005
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.564
|
-0.644
|
— |
-0.301
|
0.881
|
— |
0.672
|
-0.696
|
— | — | — | — | — |
No JSON data available for plots.