Hg_chrom6_TN10mRNA_11803
Organism: Heterodera glycines Gene Locus: chr6:4211860-4216380 Feature type: polypeptideProtein Sequence
Length: 364
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.735 | 1.789 | 0.849 | 0.474 | 0.916 | 1.268 | 0.916 | 0.962 | 1.099 | 1.225 | 1.457 | 1.616 | 1.297 | 0.423 | 0.449 | 1.217 | 0.991 | 0.916 | 0.423 | 0.97 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11137
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_7588
|
— | — |
12-ppJ2_pJ2_J3_Females
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KKKK
|
— | — | — | — |
1-23
|
0.846
|
0.999
|
0.000
|
0.000
|
0.436
|
0.092
|
0.005
|
0.653
|
0.104
|
0.245
|
0.130
|
0.027
|
0.103
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010342
|
1.000
|
1.000
|
Hsc_gene_7588.t1
|
Hsc_gene_7588.t1
|
— | — |
KAI3421820.1 SPRY domain-containing protein 3 [Globodera pallida]
|
HAW74279
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.699|GO:0110165_0.688|GO:0008150_0.683|GO:0005622_0.612|GO:0005737_0.547
|
IPR001870+152-341+|IPR003877+219-340_222-338+|IPR013320+171-339+|IPR043136+149-350+|IPR044736+220-337+|IPR050618+116-338+
|
SM00449+219-340+
|
PF00622+222-338+SPRY_domain
|
— |
PTHR12864+116-338+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
361-364
|
1.000
|
1-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
40298.810
|
8.966
|
9.500
|
23.901
|
10.440
|
51.099
|
48.901
|
13.736
|
10.165
|
50.549
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkolivegreen
|
934.054
|
12.401
|
227.492
|
257.429
|
58.495
|
15.518
|
189.094
|
19.735
|
1862.992
|
2396.680
|
2167.957
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.969
|
4.239
|
0.287
|
-2.168
|
-1.900
|
3.614
|
— |
3.400
|
— | — |
-4.897
|
— | — |