Hg_chrom6_TN10mRNA_11808
Organism: Heterodera glycines Gene Locus: chr6:4248427-4255200 Feature type: polypeptideProtein Sequence
Length: 925
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.194 | 0.981 | 0.472 | 0.336 | 0.883 | 4.047 | 0.849 | 2.378 | 0.793 | 0.847 | 0.36 | 2.099 | 0.631 | 1.081 | 0.838 | 1.452 | 0.992 | 0.59 | 0.083 | 0.286 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11142
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.859
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKLAARCRRVRHARK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.849
|
0.242
|
0.006
|
0.361
|
0.051
|
0.025
|
0.022
|
0.017
|
0.096
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004346
|
1.000
|
2.000
|
Hsc_gene_7582.t1;Hsc_gene_7582.t2
|
Hsc_gene_7582.t1;Hsc_gene_7582.t2
|
— |
Q9GNL2.1 Protein lin-14 [Caenorhabditis briggsae]
|
AFG25451.1 lin-14 [Meloidogyne incognita]
|
No
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.967|GO:0065007_0.945|GO:0009987_0.936|GO:0050789_0.936|GO:0005575_0.933|GO:0110165_0.932|GO:0050794_0.926|GO:0003674_0.893|GO:0005488_0.893|GO:0005622_0.872|GO:0032502_0.870|GO:0048856_0.870|GO:0032501_0.864|GO:0008152_0.854|GO:0019222_0.854|GO:0031323_0.851|GO:0044237_0.851|GO:0016020_0.849|GO:0043170_0.842|GO:0060255_0.842|GO:0044238_0.841|GO:0080090_0.841|GO:0009058_0.831|GO:0009889_0.831|GO:0031326_0.831|GO:0044249_0.831|GO:0007275_0.830|GO:0009059_0.827|GO:0010467_0.827|GO:0010468_0.827|GO:0010556_0.827|GO:0043226_0.821|GO:0048731_0.821|GO:0030154_0.817|GO:0048869_0.817|GO:0006139_0.810|GO:0016070_0.810|GO:0019219_0.810|GO:0048519_0.810|GO:0051252_0.810|GO:0090304_0.810|GO:0034654_0.808|GO:0141187_0.808|GO:0043229_0.807|GO:0032774_0.803|GO:0006351_0.797|GO:0006355_0.797|GO:2001141_0.797|GO:0048523_0.791|GO:0003676_0.787|GO:0097159_0.787|GO:0007399_0.785|GO:0048468_0.784|GO:0022008_0.781|GO:0043227_0.772|GO:0048699_0.772|GO:0006366_0.769|GO:0006357_0.765|GO:0030182_0.760|GO:0009892_0.748|GO:0005634_0.744|GO:0043231_0.744|GO:0050793_0.744|GO:0003677_0.739|GO:0003690_0.739|GO:0043565_0.739|GO:0051239_0.739|GO:1990837_0.739|GO:0031324_0.736|GO:0010605_0.734|GO:0000976_0.732|GO:0001067_0.732|GO:0048666_0.730|GO:0009890_0.725|GO:0010558_0.725|GO:0031327_0.725|GO:0045892_0.724|GO:0045934_0.724|GO:0051253_0.724|GO:1902679_0.724|GO:2000026_0.714|GO:0000122_0.708|GO:0000977_0.708|GO:0043228_0.701|GO:0043232_0.701|GO:0009791_0.699|GO:0045165_0.690|GO:0002164_0.678|GO:0001708_0.677|GO:0048580_0.676|GO:0002119_0.673|GO:0010453_0.670|GO:0040034_0.670|GO:0042659_0.670|GO:0061062_0.670|GO:0090444_0.670|GO:0003697_0.650|GO:0031974_0.630|GO:0031981_0.630|GO:0043233_0.630|GO:0070013_0.630|GO:0005694_0.597|GO:0000228_0.540|GO:0000793_0.540|GO:0000794_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-567;689-925
|
1.000
|
568-688
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
100337.700
|
6.864
|
9.000
|
19.135
|
8.108
|
55.351
|
44.649
|
11.243
|
7.892
|
50.919
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1269.124
|
2238.364
|
411.662
|
474.178
|
443.704
|
1231.960
|
453.164
|
520.947
|
1842.407
|
2005.370
|
1935.529
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.672
|
-2.376
|
0.312
|
— |
1.488
|
-1.435
|
-1.344
|
— | — | — | — | — | — |
No JSON data available for plots.