Hg_chrom6_TN10mRNA_11812
Organism: Heterodera glycines Gene Locus: chr6:4267266-4281816 Feature type: polypeptideProtein Sequence
Length: 2,313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.337 | 0.739 | 0.462 | 1.866 | 1.175 | 0.54 | 0.994 | 1.691 | 1.309 | 1.729 | 2.009 | 1.561 | 0.399 | 0.838 | 0.834 | 0.638 | 0.544 | 1.164 | 0.61 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11145
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
RKIKITEKNVRKIKQ,KKEKLETELKRWKAKKC,RKRADKMGEIMRRRGAK,KKMQKEAEILEEKERKI,ERKIEEEKRKKELEEWDEKEKKAKKINEKAKKEKQNTTKIGNQKKQKEAEEKKS
|
— | — | — | — | — |
0.645
|
0.471
|
0.000
|
— |
0.515
|
0.201
|
0.016
|
0.705
|
0.184
|
0.167
|
0.091
|
0.023
|
0.202
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002311
|
1.000
|
3.000
|
Hsc_gene_7579.t1;Hsc_gene_7579.t2;Hsc_gene_7579.t3
|
Hsc_gene_7578.t1
|
— | — |
CAB4008917.1 poly(A) polymerase type 3-like, partial [Paramuricea clavata]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.727|GO:0110165_0.721|GO:0005622_0.706|GO:0043226_0.643|GO:0016020_0.630|GO:0043229_0.629|GO:0043227_0.556|GO:0008150_0.552|GO:0043231_0.521
|
IPR007012+2017-2163+|IPR043519+1816-2003_1838-1958+
|
— |
PF04928+2017-2163+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1785-2285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
679-736;1411-1558
|
3.000
|
1-678;737-1410;1559-2313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
269444.800
|
7.914
|
29.000
|
32.771
|
11.198
|
52.832
|
47.168
|
17.510
|
15.262
|
36.792
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1161.421
|
42.588
|
423.291
|
240.188
|
39.424
|
34.504
|
60.940
|
38.458
|
5851.081
|
363.134
|
2715.111
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.083
|
2.358
|
-0.709
|
-2.635
|
— |
0.831
|
— |
0.806
|
3.896
|
-4.428
|
-3.000
|
— | — |