Hg_chrom6_TN10mRNA_11820
Organism: Heterodera glycines Gene Locus: chr6:4308811-4311824 Feature type: polypeptideProtein Sequence
Length: 539
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 1.165 | 1.349 | 0.64 | 1.515 | 1.142 | 0.574 | 1.763 | 0.825 | 1.605 | 1.068 | 1.31 | 0.928 | 0.428 | 1.098 | 1.325 | 0.73 | 0.675 | 0.571 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11153
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRK,KVKK,KKAFWSAKQLLREKLGKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.178
|
0.115
|
0.013
|
0.590
|
0.224
|
0.464
|
0.535
|
0.294
|
0.211
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004348
|
2.000
|
1.000
|
Hsc_gene_7569.t1
|
Hsc_gene_7569.t1
|
— |
P91124.2 Resistance to inhibitors of cholinesterase protein 19 [Caenorhabditis elegans]
|
KAF7631094.1 AH domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019904
|
GO:0005575_0.919|GO:0110165_0.919|GO:0005622_0.892|GO:0043226_0.829|GO:0016020_0.825|GO:0043229_0.812|GO:0005737_0.789|GO:0043227_0.774|GO:0043231_0.740|GO:0008150_0.695|GO:0071944_0.689|GO:0005886_0.676|GO:0009987_0.642|GO:0005773_0.598|GO:0012505_0.595|GO:0003674_0.592|GO:0005488_0.561|GO:0005515_0.537
|
IPR010504+30-278_33-226_59-226+|IPR024114+244-455+|IPR027267+57-226_58-278+
|
SM01015+30-278+
|
PF06456+33-226+Arfaptin-like_domain
|
— |
PTHR10164+244-455+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
301-361;473-539
|
2.000
|
1-300;362-472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
60550.920
|
5.327
|
-12.500
|
32.468
|
8.905
|
55.659
|
44.341
|
15.955
|
16.512
|
47.310
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
1328.946
|
4978.503
|
1119.749
|
404.673
|
146.653
|
139.571
|
254.011
|
805.557
|
768.093
|
2294.801
|
1640.497
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.382
|
-3.758
|
-1.359
|
-1.494
|
— |
0.873
|
2.432
|
-1.527
|
— | — |
-3.553
|
— | — |
No JSON data available for plots.