Hg_chrom6_TN10mRNA_11823
Organism: Heterodera glycines Gene Locus: chr6:4314460-4315978 Feature type: polypeptideProtein Sequence
Length: 211
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 1.543 | 1.379 | 0.0 | 1.027 | 0.972 | 0.226 | 0.948 | 0.948 | 1.345 | 1.652 | 1.115 | 2.37 | 0.547 | 0.87 | 1.083 | 1.088 | 0.934 | 0.365 | 0.558 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11155
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_7567
|
— |
20-Not_Clustered
|
0.914
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RFVKRVK
|
— | — | — | — | — |
0.912
|
0.236
|
0.000
|
— |
0.932
|
0.073
|
0.016
|
0.373
|
0.032
|
0.119
|
0.069
|
0.033
|
0.101
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010351
|
1.000
|
1.000
|
Hsc_gene_7567.t1
|
Hsc_gene_7567.t1
|
— |
O04539.3 Paired amphipathic helix protein Sin3-like 4 [Arabidopsis thaliana]
|
KAJ3451883.1 paired amphipathic helix sin3-like protein-related [Anaeramoeba flamelloides]
|
KAF2072198
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003714|GO:0006355
|
GO:0008150_0.930|GO:0009987_0.871|GO:0005575_0.779|GO:0110165_0.779|GO:0065007_0.747|GO:0050789_0.738|GO:0005622_0.737|GO:0008152_0.719|GO:0050794_0.716|GO:0016020_0.702|GO:0044237_0.702|GO:0043226_0.699|GO:0009058_0.697|GO:0043170_0.693|GO:0043229_0.689|GO:0044249_0.680|GO:0009059_0.672|GO:0043227_0.663|GO:0010467_0.662|GO:0019222_0.662|GO:0043231_0.657|GO:0048519_0.654|GO:0031323_0.652|GO:0060255_0.649|GO:0048523_0.646|GO:0009889_0.641|GO:0031326_0.641|GO:0010468_0.638|GO:0010556_0.638|GO:0009892_0.626|GO:0044238_0.626|GO:0010605_0.623|GO:0031324_0.622|GO:0009890_0.618|GO:0010558_0.618|GO:0031327_0.618|GO:0006139_0.584|GO:0080090_0.571|GO:0034654_0.570|GO:0090304_0.568|GO:0016070_0.564|GO:0141187_0.564|GO:0032774_0.558|GO:0019219_0.551|GO:0006351_0.549|GO:0051252_0.548|GO:2001141_0.547|GO:0006355_0.545|GO:0045934_0.537|GO:0051253_0.537|GO:0045892_0.536|GO:1902679_0.536|GO:0050896_0.507
|
IPR003822+49-120_74-117_127-198_153-194+|IPR036600+52-118_56-118_127-195_134-195+|IPR039774+47-200+
|
— |
PF02671+74-117_153-194+Paired_amphipathic_helix_repeat
|
— |
PTHR12346+47-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
24373.800
|
9.526
|
5.000
|
30.806
|
12.796
|
55.450
|
44.550
|
17.062
|
13.744
|
45.972
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
270.280
|
120.430
|
81.565
|
121.194
|
54.242
|
7.732
|
19.356
|
25.321
|
815.331
|
409.787
|
583.592
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.790
|
— |
0.678
|
-1.192
|
-2.793
|
1.330
|
1.617
|
— | — | — | — | — | — |