Hg_chrom6_TN10mRNA_11829
Organism: Heterodera glycines Gene Locus: chr6:4334577-4341811 Feature type: polypeptideProtein Sequence
Length: 1,463
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 1.526 | 0.684 | 0.377 | 1.937 | 1.209 | 0.423 | 0.889 | 1.595 | 1.413 | 1.73 | 1.769 | 1.5 | 0.539 | 0.893 | 0.976 | 0.482 | 0.497 | 1.209 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11161
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKGKSK,KKESEKMEKEKRNGKK,KKRWREKEEIKRKKLL,KKEERVIKRKKNLRKSEK,KRPKFNKFLEELFERKKIE,KKGREKIEQKNYNKKKYKW,KKKYKWSKKESEKMEKEKR,KKYKWSKKESEKMEKEKRN,RKENSEQIGEKQNEKKRWR,KRKKLLEKKEREKEERSKK,RKKLLEKKEREKEERSKKW,RKERKWMEKEKKEERVIKR,RKWMEKEKKEERVIKRKKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.603
|
0.212
|
0.015
|
0.591
|
0.194
|
0.162
|
0.157
|
0.040
|
0.130
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010355
|
1.000
|
1.000
|
Hsc_gene_7559.t1
|
Hsc_gene_7559.t1;Hsc_gene_7560.t1
|
— | — |
KAI6216425.1 Poly(A) polymerase [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.756|GO:0110165_0.756|GO:0005622_0.737|GO:0016020_0.696|GO:0043226_0.694|GO:0043229_0.677|GO:0043227_0.634|GO:0008150_0.602|GO:0043231_0.601|GO:0003674_0.521|GO:0009987_0.514
|
IPR007012+1164-1305+|IPR043519+992-1149_1003-1107+|IPR048840+1002-1144+
|
— |
PF04928+1164-1305+Poly(A)_polymerase_central_domain|PF20750+1002-1144+Poly(A)_polymerase_nucleotidyltransferase_domain
|
— |
PTHR10682+949-1400+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
512-715
|
2.000
|
1-511;716-1463
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
172454.310
|
8.146
|
19.000
|
32.946
|
11.825
|
53.999
|
46.001
|
17.567
|
15.379
|
35.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
265.320
|
5.499
|
20.750
|
169.532
|
42.833
|
15.774
|
6.779
|
3.995
|
154.027
|
945.821
|
606.481
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.689
|
4.808
|
3.132
|
-2.013
|
-1.428
|
-1.211
|
-2.091
|
— | — | — |
-4.016
|
— | — |
No JSON data available for plots.