Hg_chrom6_TN10mRNA_11841
Organism: Heterodera glycines Gene Locus: chr6:4377290-4377851 Feature type: polypeptideProtein Sequence
Length: 88
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 0.264 | 1.033 | 3.918 | 0.947 | 0.874 | 0.812 | 2.273 | 1.01 | 0.768 | 1.205 | 3.342 | 1.263 | 0.656 | 1.16 | 1.136 | 0.186 | 0.861 | 1.748 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11172
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.517
|
0.425
|
0.012
|
0.648
|
0.045
|
0.048
|
0.076
|
0.016
|
0.197
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010361
|
1.000
|
1.000
|
Hsc_gene_7548.t1
|
Hsc_gene_7548.t1
|
— | — |
KAI1718977.1 LIM domain-containing protein, variant [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.931|GO:0009987_0.862|GO:0003674_0.823|GO:0005488_0.823|GO:0005515_0.800|GO:0071840_0.726|GO:0016043_0.723|GO:0006996_0.688|GO:0044085_0.682|GO:0022607_0.680|GO:0007010_0.670|GO:0007015_0.670|GO:0030029_0.670|GO:0030036_0.670|GO:0051017_0.670|GO:0061572_0.670|GO:0097435_0.670|GO:0097159_0.665|GO:0003676_0.663|GO:0044877_0.656|GO:0003723_0.655|GO:0003729_0.650|GO:0003779_0.650|GO:0008092_0.650|GO:0051015_0.650
|
IPR001781+2-50+
|
— |
PF00412+2-50+LIM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-88
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
10081.810
|
7.762
|
4.000
|
29.545
|
13.636
|
43.182
|
56.818
|
18.182
|
11.364
|
47.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
177.436
|
8.692
|
679.218
|
196.751
|
29.228
|
78.161
|
9.105
|
1021.230
|
23.850
|
0.000
|
10.221
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.054
|
4.359
|
-1.678
|
-2.783
|
1.434
|
-3.099
|
3.606
|
-6.675
|
— | — | — | — | — |
No JSON data available for plots.