Hg_chrom6_TN10mRNA_11842
Organism: Heterodera glycines Gene Locus: chr6:4378759-4379173 Feature type: polypeptideProtein Sequence
Length: 107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.326 | 0.217 | 0.68 | 2.578 | 0.779 | 3.595 | 0.779 | 2.336 | 1.246 | 0.505 | 1.416 | 4.398 | 1.817 | 0.719 | 0.572 | 0.668 | 0.613 | 0.283 | 1.438 | 1.1 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11173
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.288
|
0.007
|
0.571
|
0.044
|
0.233
|
0.086
|
0.002
|
0.160
|
0.438
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010362
|
1.000
|
1.000
|
Hsc_gene_7547.t1
|
Hsc_gene_7547.t1
|
— | — |
KAI1718977.1 LIM domain-containing protein, variant [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.938|GO:0009987_0.891|GO:0003674_0.863|GO:0005488_0.863|GO:0005515_0.832|GO:0016043_0.752|GO:0071840_0.752|GO:0006996_0.705|GO:0044085_0.692|GO:0003676_0.691|GO:0097159_0.691|GO:0022607_0.690|GO:0007010_0.678|GO:0030029_0.676|GO:0030036_0.675|GO:0097435_0.675|GO:0007015_0.674|GO:0051017_0.670|GO:0061572_0.670|GO:0003723_0.663|GO:0044877_0.660|GO:0008092_0.654|GO:0003729_0.650|GO:0003779_0.650|GO:0051015_0.650
|
IPR001781+10-71_12-60+
|
— |
PF00412+12-60+LIM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
104-107
|
1.000
|
1-103
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
12696.780
|
8.305
|
6.500
|
25.234
|
16.822
|
48.598
|
51.402
|
16.822
|
8.411
|
35.514
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
227.959
|
75.923
|
605.745
|
184.518
|
35.797
|
106.629
|
6.701
|
1476.715
|
82.245
|
1.129
|
35.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.768
|
1.144
|
-1.608
|
-2.399
|
1.589
|
-3.983
|
3.692
|
-7.644
|
4.755
|
— | — | — | — |
No JSON data available for plots.