Hg_chrom6_TN10mRNA_11843
Organism: Heterodera glycines Gene Locus: chr6:4380379-4381653 Feature type: polypeptideProtein Sequence
Length: 205
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.681 | 1.588 | 1.064 | 2.691 | 0.976 | 0.75 | 0.813 | 0.976 | 1.192 | 0.857 | 0.961 | 1.435 | 1.897 | 0.844 | 0.597 | 1.254 | 0.56 | 0.813 | 0.375 | 1.004 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11174
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-24
|
0.993
|
1.000
|
0.000
|
0.000
|
0.258
|
0.110
|
0.028
|
0.352
|
0.264
|
0.168
|
0.326
|
0.028
|
0.240
|
0.670
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010363
|
1.000
|
1.000
|
Hsc_gene_7546.t1
|
Hsc_gene_7546.t1
|
— | — |
KAI3407816.1 hypothetical protein GPALN_014154 [Globodera pallida]
|
WP_325514334
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
— |
IPR002048+135-170_144-159_144-201_181-201+|IPR011992+136-204+|IPR018247+187-199+
|
— |
PF13202+144-159_181-201+EF_hand
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
180-205
|
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
22768.910
|
5.280
|
-3.000
|
22.927
|
12.683
|
44.878
|
55.122
|
11.220
|
11.707
|
55.122
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
634.078
|
7.201
|
13.551
|
4.757
|
1.827
|
338.053
|
4.062
|
6430.083
|
0.000
|
224.267
|
128.152
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-1.397
|
— |
7.547
|
-6.371
|
4.152
|
-10.491
|
— | — | — | — |
-7.933
|