SCN Proteipedia

Hg_chrom6_TN10mRNA_11844

Organism: Heterodera glycines Gene Locus: chr6:4382141-4387289 Feature type: polypeptide

Protein Sequence

Length: 815

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.885	1.284	0.736	0.592	1.063	1.227	0.657	1.534	0.927	1.559	0.762	1.949	1.466	0.566	1.327	0.876	0.945	0.967	1.038	0.866	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11175	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RQKLRKKRHKKLCRK	8-29	0.983	—	—	—	—	0.000	—	—	0.138	0.090	0.009	0.189	0.326	0.385	0.199	0.013	0.552	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004352	1.000	2.000	Hsc_gene_7544.t1;Hsc_gene_7544.t2	Hsc_gene_7544.t1;Hsc_gene_7544.t2;Hsc_gene_7545.t1;Hsc_gene_7545.t2	—	Q00194.1 cGMP-gated cation channel alpha-1 [Bos taurus]	KAI1726519.1 ion transport protein domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085	GO:0008150_0.865\|GO:0005575_0.864\|GO:0110165_0.860\|GO:0009987_0.830\|GO:0016020_0.819\|GO:0003674_0.786\|GO:0051179_0.748\|GO:0006810_0.744\|GO:0051234_0.744\|GO:0071944_0.715\|GO:0005886_0.707\|GO:0055085_0.649\|GO:0006811_0.624\|GO:0034220_0.618\|GO:0005215_0.598\|GO:0022857_0.598\|GO:0015267_0.589\|GO:0022803_0.589\|GO:0005216_0.588\|GO:0015075_0.588\|GO:0006812_0.586\|GO:0098655_0.580\|GO:0022836_0.566\|GO:0008324_0.556\|GO:0005261_0.555\|GO:0015276_0.554\|GO:0022834_0.554\|GO:0043855_0.539\|GO:0043226_0.529\|GO:0099094_0.529\|GO:0005217_0.522\|GO:0005221_0.522\|GO:0005488_0.513	IPR000595+602-719_602-723_602-725_622-710+\|IPR005821+233-527+\|IPR014710+595-730+\|IPR018488+629-645+\|IPR018490+530-726+\|IPR050866+120-776+	SM00100+602-723+	PF00027+622-710+Cyclic_nucleotide-binding_domain\|PF00520+233-527+Ion_transport_protein	—	PTHR45638+120-776+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-7;65-196;813-815	2.000	8-64;197-812	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.696	92952.790	8.551	21.500	25.031	12.638	47.239	52.761	14.601	10.429	45.644

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	278.721	663.810	586.411	286.279	69.188	75.023	32.757	1404.170	47.277	14.833	28.738

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.409	-1.351	-0.925	-2.080	—	-1.188	4.128	-5.284	—	—	—	—	—

No JSON data available for plots.

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