Hg_chrom6_TN10mRNA_11846
Organism: Heterodera glycines Gene Locus: chr6:4389971-4392833 Feature type: polypeptideProtein Sequence
Length: 465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.8 | 1.1 | 0.743 | 0.667 | 1.075 | 1.103 | 0.922 | 1.075 | 1.386 | 0.843 | 1.14 | 1.012 | 1.912 | 0.868 | 1.931 | 0.737 | 0.811 | 0.749 | 1.323 | 0.696 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11177
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RKTFWNAIGSWKNKQKKE,RKRMVAPTFGSVHGRKSAK
|
— | — | — | — | — |
0.523
|
0.343
|
0.000
|
— |
0.303
|
0.166
|
0.070
|
0.585
|
0.116
|
0.080
|
0.082
|
0.019
|
0.359
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004353
|
1.000
|
2.000
|
Hsc_gene_10145.t1;Hsc_gene_7542.t1
|
— | — |
Q99JW2.1 Aminoacylase-1 [Mus musculus]
|
KAH7731009.1 Protein C06A6.4 a [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.868|GO:0003824_0.751|GO:0008150_0.704|GO:0016787_0.694|GO:0004046_0.650|GO:0016810_0.650|GO:0016811_0.650|GO:0008152_0.572|GO:0044238_0.559|GO:0005575_0.543|GO:0110165_0.543|GO:0043170_0.527
|
IPR052083+107-192+
|
— | — | — |
PTHR45892+107-192+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-465
|
1q7l_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
53479.330
|
10.504
|
35.000
|
29.677
|
13.118
|
48.817
|
51.183
|
19.140
|
10.538
|
44.946
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
80.442
|
19.784
|
7.539
|
2.776
|
1.486
|
0.496
|
6.083
|
20.662
|
7.372
|
324.346
|
188.500
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.627
|
-2.965
|
-1.325
|
— | — |
3.611
|
5.268
|
-1.628
|
-5.545
|
— |
-7.354
|
— | — |