Hg_chrom6_TN10mRNA_11848
Organism: Heterodera glycines Gene Locus: chr6:4395437-4397345 Feature type: polypeptideProtein Sequence
Length: 346
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.941 | 1.546 | 0.998 | 0.797 | 1.06 | 0.445 | 0.688 | 1.734 | 1.285 | 1.367 | 0.92 | 2.04 | 1.124 | 0.778 | 1.062 | 0.908 | 0.758 | 1.27 | 0.445 | 0.425 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11179
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.927
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKFSSPVAKEIAKKDAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.298
|
0.156
|
0.022
|
0.761
|
0.125
|
0.177
|
0.186
|
0.004
|
0.310
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010365
|
1.000
|
1.000
|
Hsc_gene_7540.t1
|
Hsc_gene_7540.t1
|
— |
Q6AYR2.1 Protein NDRG3 [Rattus norvegicus]
|
KAI1725449.1 ndr family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.866|GO:0005575_0.736|GO:0110165_0.729|GO:0005622_0.643|GO:0005737_0.596|GO:0016020_0.558|GO:0065007_0.528|GO:0050789_0.513|GO:0009987_0.508
|
IPR004142+21-287_21-309+|IPR029058+3-283_10-282+
|
— |
PF03096+21-287+Ndr_family
|
— |
PTHR11034+21-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;331-346
|
1.000
|
3-330
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
38358.230
|
7.073
|
4.000
|
26.590
|
9.538
|
45.954
|
54.046
|
14.740
|
11.850
|
51.734
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2625.865
|
17169.115
|
1209.274
|
1027.128
|
1392.883
|
3502.967
|
2547.343
|
952.696
|
119.906
|
972.701
|
607.218
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.058
|
-4.200
|
— |
0.407
|
1.345
|
-0.450
|
-1.979
|
1.560
|
— | — | — | — | — |
No JSON data available for plots.