Hg_chrom6_TN10mRNA_11849
Organism: Heterodera glycines Gene Locus: chr6:4399729-4400636 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.44 | 1.057 | 0.689 | 0.261 | 1.515 | 0.777 | 0.812 | 1.136 | 2.02 | 0.819 | 1.377 | 2.228 | 0.421 | 0.728 | 2.165 | 0.541 | 1.242 | 1.033 | 0.0 | 1.114 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11180
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRICEEVAIVPSKKMRNR
|
40-60
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.334
|
0.481
|
0.015
|
0.509
|
0.153
|
0.049
|
0.177
|
0.002
|
0.115
|
0.200
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010366
|
1.000
|
1.000
|
Hsc_gene_7539.t1
|
Hsc_gene_7539.t1
|
— |
A5PK63.1 Small ribosomal subunit protein eS17 [Bos taurus]
|
KAI1706306.1 ribosomal s17 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.921|GO:0110165_0.920|GO:0005622_0.829|GO:0005737_0.745|GO:0043226_0.642|GO:0043229_0.634|GO:0005829_0.608|GO:0003674_0.540
|
IPR001210+2-64_3-116+|IPR018273+42-57+|IPR036401+2-63_3-62+
|
— |
PF00833+3-116+Ribosomal_S17
|
G3DSA:1.10.60.20:FF:000001+2-63+40S_ribosomal_protein_S17
|
PTHR10732+3-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;129-132
|
1.000
|
2-128
|
6yan_T
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
15301.730
|
10.418
|
10.500
|
34.848
|
7.576
|
53.788
|
46.212
|
21.970
|
12.879
|
41.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
7031.868
|
3046.821
|
4568.180
|
7751.046
|
7987.473
|
6157.952
|
4134.773
|
2954.650
|
13172.984
|
7159.350
|
9736.621
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.356
|
1.210
|
0.871
|
— |
-0.360
|
-0.563
|
-1.167
|
0.630
|
— | — | — | — | — |
No JSON data available for plots.