Hg_chrom6_TN10mRNA_11853
Organism: Heterodera glycines Gene Locus: chr6:4410227-4418116 Feature type: polypeptideProtein Sequence
Length: 1,451
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.603 | 0.89 | 0.356 | 1.734 | 0.99 | 0.632 | 0.861 | 1.47 | 1.146 | 1.754 | 1.743 | 1.704 | 0.424 | 1.196 | 0.807 | 0.52 | 0.533 | 1.007 | 0.77 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11184
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
FKRR,RRKR,KRWRSAEKAMKERLK,KRRNKKAANFKYKLK,KKEEIQRKTVLKNGRK,RRKFGFCLMIDGKMRLK,RRQDKSWADRKRRKVHR,KKLKKGHLKYLIKKRTG,RKGGGGGKAEEKEGRRRRK,KRMGKKLKKGHLKYLIKKR,NKRKQKSTAKRRKKREAFEK
|
— | — | — | — | — | — |
0.140
|
— | — |
0.331
|
0.184
|
0.012
|
0.252
|
0.422
|
0.200
|
0.219
|
0.036
|
0.312
|
0.362
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002312
|
2.000
|
2.000
|
Hsc_gene_7535.t1;Hsc_gene_7535.t2
|
Hsc_gene_7535.t1
|
— | — |
KAI3410494.1 hypothetical protein GPALN_004595 [Globodera pallida]
|
NLL59007
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
634-710;805-936;1158-1257
|
4.000
|
1-633;711-804;937-1157;1258-1451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
169635.250
|
9.519
|
43.500
|
34.459
|
11.785
|
54.032
|
45.968
|
19.159
|
15.300
|
38.456
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
237.864
|
2.762
|
74.287
|
67.912
|
29.390
|
5.832
|
6.507
|
3.309
|
1085.020
|
155.640
|
553.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.524
|
4.485
|
— |
-1.245
|
-2.317
|
— | — | — | — |
-3.814
|
— | — | — |
No JSON data available for plots.