Hg_chrom6_TN10mRNA_11855
Organism: Heterodera glycines Gene Locus: chr6:4424644-4427912 Feature type: polypeptideProtein Sequence
Length: 198
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.294 | 1.644 | 0.643 | 0.522 | 1.347 | 1.036 | 0.481 | 2.02 | 1.01 | 0.956 | 0.842 | 1.485 | 1.824 | 0.971 | 2.371 | 1.804 | 0.497 | 0.536 | 0.389 | 0.743 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11185
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKKR,KKRSEEFRLASKNSHSRKKQNRR
|
8-34
|
0.989
|
1-41
|
1.000
|
— | — |
0.000
|
— | — |
0.160
|
0.939
|
0.029
|
0.213
|
0.026
|
0.024
|
0.029
|
0.009
|
0.032
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010369
|
1.000
|
1.000
|
Hsc_gene_7534.t1
|
Hsc_gene_7534.t1
|
— |
B5XAM2.1 Large ribosomal subunit protein mL62 [Salmo salar]
|
KAF7632772.1 RF_PROK_I domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003747|GO:0006415
|
GO:0005575_0.907|GO:0110165_0.907|GO:0005622_0.884|GO:0043226_0.844|GO:0016020_0.838|GO:0043229_0.837|GO:0043227_0.791|GO:0043231_0.782|GO:0005737_0.744|GO:0008150_0.603|GO:0005739_0.560|GO:0009987_0.550
|
IPR000352+56-192+|IPR052104+50-196+
|
— |
PF00472+56-192+RF-1_domain
|
— |
PTHR11075+50-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
152-198
|
1.000
|
1-151
|
5aj4_Bu
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
23355.260
|
10.447
|
15.000
|
32.828
|
13.636
|
59.596
|
40.404
|
21.212
|
11.616
|
42.929
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1303.796
|
601.823
|
510.987
|
612.042
|
767.415
|
945.477
|
945.819
|
1211.234
|
1526.150
|
2461.448
|
2060.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.466
|
— |
0.369
|
0.295
|
0.316
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.