Hg_chrom6_TN10mRNA_11857
Organism: Heterodera glycines Gene Locus: chr6:4432999-4435097 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 1.558 | 1.008 | 0.637 | 0.924 | 1.303 | 0.605 | 0.808 | 1.334 | 1.28 | 0.91 | 0.543 | 0.962 | 0.844 | 0.801 | 1.188 | 1.401 | 1.26 | 0.355 | 0.543 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11187
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
55-118
|
0.982
|
— | — |
0.000
|
— | — |
0.159
|
0.122
|
0.029
|
0.361
|
0.091
|
0.093
|
0.132
|
0.079
|
0.200
|
0.837
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010371
|
1.000
|
1.000
|
Hsc_gene_7532.t1
|
Hsc_gene_7532.t1
|
— |
Q21540.2 Cuticlin-6 [Caenorhabditis elegans]
|
KAI1729053.1 von willebrand factor type A domain-containing protein [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.892|GO:0110165_0.881|GO:0008150_0.600|GO:0071944_0.597
|
IPR002035+250-426_252-418_252-426+|IPR036465+242-418_242-432+|IPR050525+158-418+
|
SM00327+250-426+
|
PF00092+252-418+von_Willebrand_factor_type_A_domain
|
— |
PTHR24020+158-418+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
182-240
|
2.000
|
1-181;241-433
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
47448.750
|
6.174
|
-1.500
|
22.633
|
7.390
|
51.270
|
48.730
|
11.547
|
11.085
|
55.658
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
55.793
|
46.545
|
134.984
|
35.383
|
15.762
|
7.487
|
59.407
|
69.916
|
4.838
|
101.908
|
60.306
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.310
|
-0.532
|
-1.825
|
-1.200
|
-1.056
|
2.994
|
3.128
|
— | — | — | — | — | — |
No JSON data available for plots.