Hg_chrom6_TN10mRNA_11859
Organism: Heterodera glycines Gene Locus: chr6:4439618-4441776 Feature type: polypeptideProtein Sequence
Length: 384
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.635 | 1.042 | 0.359 | 1.172 | 1.202 | 0.93 | 1.042 | 1.331 | 1.267 | 1.223 | 1.072 | 1.085 | 0.801 | 0.85 | 0.93 | 0.897 | 0.789 | 0.401 | 0.919 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11189
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_7530
|
— | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-25
|
0.941
|
0.997
|
0.000
|
0.000
|
0.673
|
0.069
|
0.063
|
0.506
|
0.343
|
0.136
|
0.065
|
0.017
|
0.128
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010373
|
1.000
|
1.000
|
Hsc_gene_7530.t1
|
— | — | — |
KAI3407415.1 Ran-binding protein 10 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.714|GO:0005575_0.668|GO:0110165_0.668|GO:0005622_0.596|GO:0005737_0.527
|
IPR001870+180-376+|IPR003877+246-373+|IPR013320+200-377+|IPR043136+175-383+|IPR044736+231-372+|IPR050618+131-373+
|
— |
PF00622+246-373+SPRY_domain
|
— |
PTHR12864+131-373+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-157
|
1.000
|
158-384
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
42792.390
|
6.907
|
2.000
|
27.083
|
9.635
|
50.781
|
49.219
|
14.323
|
12.760
|
49.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
2435.389
|
8.432
|
135.846
|
369.885
|
96.192
|
24.835
|
46.258
|
40.483
|
1336.502
|
9381.727
|
5933.774
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.783
|
5.320
|
1.554
|
-1.974
|
-1.939
|
0.908
|
— | — |
-2.912
|
— |
-6.137
|
— | — |