Hg_chrom6_TN10mRNA_11861
Organism: Heterodera glycines Gene Locus: chr6:4445220-4447689 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 1.648 | 0.92 | 1.536 | 1.316 | 1.401 | 0.482 | 1.417 | 1.574 | 1.094 | 0.889 | 0.953 | 2.024 | 0.74 | 1.115 | 0.954 | 0.398 | 0.429 | 2.336 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11191
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRGCCEIASPSSRKRSH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.669
|
0.132
|
0.006
|
0.621
|
0.165
|
0.212
|
0.138
|
0.076
|
0.065
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001067
|
2.000
|
3.000
|
Hsc_gene_15951.t1;Hsc_gene_7528.t1;Hsc_gene_7528.t2
|
Hsc_gene_7528.t1;Hsc_gene_7528.t2
|
— |
Q80ZI6.1 E3 ubiquitin-protein ligase LRSAM1 [Mus musculus]
|
XP_041017734.1 E3 ubiquitin-protein ligase SPL2 [Juglans microcarpa x Juglans regia]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.813|GO:0005575_0.753|GO:0110165_0.753|GO:0009987_0.724|GO:0005622_0.689|GO:0003674_0.620|GO:0005737_0.602|GO:0065007_0.592|GO:0050789_0.581|GO:0050794_0.556
|
IPR001841+441-482+|IPR013083+424-493+
|
— |
PF13920+438-487+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR46858+408-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-494
|
6hpr_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
57920.770
|
6.381
|
-1.000
|
27.126
|
15.789
|
48.785
|
51.215
|
14.170
|
12.955
|
42.713
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
449.781
|
1.542
|
6.319
|
318.460
|
147.106
|
11.028
|
13.186
|
2.480
|
25.392
|
1761.201
|
1017.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.803
|
7.563
|
5.773
|
-1.145
|
-3.723
|
— |
-2.267
|
2.555
|
-4.955
|
— | — | — | — |
No JSON data available for plots.