Hg_chrom6_TN10mRNA_11865
Organism: Heterodera glycines Gene Locus: chr6:4454576-4458148 Feature type: polypeptideProtein Sequence
Length: 395
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.119 | 0.644 | 0.786 | 1.013 | 1.883 | 0.573 | 1.013 | 1.35 | 1.129 | 0.806 | 1.34 | 1.547 | 1.363 | 0.982 | 0.904 | 1.079 | 0.997 | 0.584 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11194
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
29-56
|
0.964
|
— | — |
0.000
|
— | — |
0.495
|
0.101
|
0.007
|
0.661
|
0.208
|
0.282
|
0.085
|
0.036
|
0.067
|
0.255
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002313
|
1.000
|
3.000
|
Hsc_gene_11112.t1;Hsc_gene_11112.t2;Hsc_gene_7525.t1
|
— | — |
Q28FM1.1 Ran-binding protein 9 [Xenopus tropicalis]
|
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.745|GO:0005575_0.690|GO:0110165_0.690|GO:0005622_0.628|GO:0005737_0.551|GO:0009987_0.506
|
IPR001870+202-389+|IPR003877+269-388_272-385+|IPR013320+211-388+|IPR043136+199-395+|IPR044736+253-385+|IPR050618+149-388+
|
SM00449+269-388+
|
PF00622+272-385+SPRY_domain
|
— |
PTHR12864+149-388+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89
|
1.000
|
90-395
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
44461.010
|
7.835
|
6.000
|
21.772
|
10.886
|
46.835
|
53.165
|
12.152
|
9.620
|
48.861
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
333.706
|
64.633
|
120.792
|
157.834
|
372.764
|
290.128
|
296.744
|
251.478
|
7.709
|
871.291
|
501.185
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
1.151
|
0.496
|
1.208
|
-0.347
|
— | — | — |
-6.939
|
— | — | — | — |
No JSON data available for plots.