SCN Proteipedia

Hg_chrom6_TN10mRNA_11867

Organism: Heterodera glycines Gene Locus: chr6:4463495-4480285 Feature type: polypeptide

Protein Sequence

Length: 3,313

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.979	1.081	0.735	0.781	1.152	1.401	0.762	1.328	0.899	1.485	0.649	1.385	1.073	0.911	1.368	1.371	0.787	0.782	0.906	0.435	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11195	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	RHRR,KKRGSQNDSWQRRRHS,KKQRIFQQQQQSPRKKNI,KRRESPTQHQQSSSRRESR,RLAKSKSTKFKNNNNSPKKASRVPK	—	—	—	—	—	—	0.000	—	—	0.217	0.419	0.024	0.618	0.140	0.501	0.520	0.066	0.387	0.122

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001353	3.000	2.000	Hsc_gene_7523.t1;Hsc_gene_7523.t2	Hsc_gene_12197.t1;Hsc_gene_7523.t1;Hsc_gene_7523.t2	—	Q9TZM3.6 Leucine-rich repeat serine/threonine-protein kinase 1 [Caenorhabditis elegans]	KAI1724769.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.904\|GO:0005575_0.902\|GO:0110165_0.899\|GO:0009987_0.803\|GO:0005622_0.775\|GO:0065007_0.717\|GO:0050789_0.701\|GO:0016020_0.686\|GO:0005737_0.644\|GO:0050794_0.626\|GO:0050896_0.602\|GO:0032502_0.569\|GO:0043226_0.569\|GO:0048856_0.558\|GO:0043229_0.545\|GO:0003674_0.540\|GO:0051716_0.540\|GO:0032501_0.536\|GO:0071944_0.514\|GO:0043227_0.511\|GO:0071840_0.502	IPR000719+2302-2640_2382-2633+\|IPR001611+574-634_877-898_1069-1090+\|IPR002110+11-101_38-67_38-70_74-103_74-106_107-136_181-212_186-271_214-244_248-277_318-347_373-442_376-398_376-406_417-447+\|IPR003591+570-593_594-618_621-644_647-670_671-693_875-898_1010-1033_1067-1090+\|IPR008271+2480-2492+\|IPR011009+2286-2633+\|IPR020859+1158-1425+\|IPR027417+1164-1422_1315-1429+\|IPR032675+522-768_845-932_959-1139+\|IPR036770+2-139_9-202_140-279_177-442_303-493+	SM00220+2302-2640+\|SM00248+38-67_74-103_107-136_181-212_214-244_248-277_318-347_376-406_417-447+\|SM00364+570-589_621-640_647-666_670-689_898-915_1067-1086+\|SM00369+570-593_594-618_621-644_647-670_671-693_875-898_1010-1033_1067-1090+	PF00069+2382-2633+Protein_kinase_domain\|PF12796+11-101_186-271_373-442+Ankyrin_repeats_(3_copies)\|PF13855+574-634+Leucine_rich_repeat	—	PTHR24198+13-128+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	470-515;692-857;1184-1240;1865-1932;2113-2273;3125-3171	7.000	1-469;516-691;858-1183;1241-1864;1933-2112;2274-3124;3172-3313	1mj0_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.791	367023.660	7.550	45.000	24.600	9.176	49.110	50.890	13.643	10.957	50.075

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2965.414	6072.562	4827.447	3530.075	2553.755	2397.107	2221.476	2710.147	2755.468	1789.873	2203.699

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.560	-0.920	-0.343	-0.499	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser