Hg_chrom6_TN10mRNA_11868
Organism: Heterodera glycines Gene Locus: chr6:4485311-4487244 Feature type: polypeptideProtein Sequence
Length: 244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.477 | 1.118 | 0.848 | 0.41 | 1.261 | 0.439 | 1.025 | 1.184 | 1.717 | 0.994 | 0.723 | 2.049 | 0.394 | 1.422 | 1.171 | 0.941 | 1.304 | 0.946 | 0.723 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11196
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKTKVAAQFFRCKKL
|
3-68
|
0.855
|
— | — | — | — |
0.000
|
— | — |
0.517
|
0.326
|
0.173
|
0.430
|
0.317
|
0.088
|
0.195
|
0.070
|
0.065
|
0.259
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010376
|
1.000
|
1.000
|
Hsc_gene_7521.t1
|
Hsc_gene_7521.t1
|
— |
Q2MGL3.1 Ribonuclease P protein subunit p20 [Drosophila melanogaster]
|
KAI1715398.1 rpp20 subunit of nuclear RNase MRP and P domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000172|GO:0001682|GO:0003676|GO:0005655|GO:0006396
|
GO:0005575_0.901|GO:0110165_0.898|GO:0016020_0.835|GO:0005622_0.799|GO:0005737_0.756|GO:0043226_0.744|GO:0043229_0.736|GO:0043227_0.722|GO:0043231_0.711|GO:0005634_0.577
|
IPR014612+146-239_147-244+|IPR036882+142-241_146-243+
|
— |
PF12328+146-239+Rpp20_subunit_of_nuclear_RNase_MRP_and_P
|
— |
PTHR15314+147-244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-244
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
27785.470
|
10.034
|
14.500
|
24.180
|
13.115
|
45.082
|
54.918
|
15.574
|
8.607
|
46.721
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
1782.420
|
1509.212
|
1305.187
|
1773.794
|
2080.171
|
2000.960
|
1679.283
|
1236.512
|
1117.400
|
2615.616
|
1973.524
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.440
|
0.096
|
0.552
|
0.198
|
— |
-0.244
|
-0.799
|
0.583
|
— | — | — | — | — |
No JSON data available for plots.