Hg_chrom6_TN10mRNA_11869
Organism: Heterodera glycines Gene Locus: chr6:4487323-4490265 Feature type: polypeptideProtein Sequence
Length: 478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 1.022 | 1.255 | 1.082 | 0.872 | 0.912 | 0.872 | 1.255 | 1.348 | 1.442 | 0.539 | 1.477 | 0.872 | 0.764 | 2.007 | 0.897 | 0.514 | 0.919 | 1.126 | 0.677 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11197
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.908
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
2-22
|
0.990
|
20-57
|
0.998
|
— | — |
0.000
|
— | — |
0.084
|
0.940
|
0.004
|
0.205
|
0.029
|
0.042
|
0.045
|
0.018
|
0.067
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010377
|
1.000
|
1.000
|
Hsc_gene_7520.t1
|
Hsc_gene_7520.t1
|
— |
P08165.3 NADPH:adrenodoxin oxidoreductase, mitochondrial [Bos taurus]
|
KAI1715399.1 pyridine nucleotide-disulfide oxidoreductase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.768|GO:0110165_0.755|GO:0008150_0.745|GO:0003674_0.676|GO:0016020_0.608|GO:0005622_0.603|GO:0009987_0.597|GO:0003824_0.575|GO:0008152_0.560|GO:0005737_0.539|GO:0043226_0.526|GO:0043229_0.520
|
IPR021163+24-478+|IPR023753+31-188+|IPR036188+68-344+|IPR050711+30-474+
|
— |
PF07992+31-188+Pyridine_nucleotide-disulphide_oxidoreductase
|
— |
PTHR11938+30-474+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
53810.710
|
8.224
|
12.000
|
28.033
|
9.414
|
45.397
|
54.603
|
15.900
|
12.134
|
49.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
906.107
|
1084.054
|
868.371
|
828.796
|
861.768
|
661.335
|
817.548
|
818.288
|
1267.690
|
785.891
|
992.376
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.551
|
-0.524
|
— | — |
-0.367
|
0.317
|
0.202
|
— | — | — | — | — | — |
No JSON data available for plots.