Hg_chrom6_TN10mRNA_11872
Organism: Heterodera glycines Gene Locus: chr6:4496219-4496708 Feature type: polypeptideProtein Sequence
Length: 91
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.256 | 1.278 | 0.999 | 0.379 | 1.648 | 0.0 | 1.047 | 0.549 | 1.709 | 1.337 | 0.999 | 3.232 | 0.305 | 1.057 | 0.449 | 0.471 | 1.441 | 1.832 | 0.845 | 0.646 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.880
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.661
|
0.058
|
0.028
|
0.583
|
0.239
|
0.355
|
0.195
|
0.007
|
0.020
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010379
|
1.000
|
1.000
|
Hsc_gene_7516.t1
|
Hsc_gene_7516.t1
|
— |
P62322.2 U6 snRNA-associated Sm-like protein LSm5 [Mus musculus]
|
KAI1722297.1 LSM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0008150_0.882|GO:0005575_0.810|GO:0110165_0.804|GO:0009987_0.691|GO:0005622_0.687|GO:0016020_0.669|GO:0043226_0.635|GO:0043229_0.622|GO:0043227_0.589|GO:0043231_0.587|GO:0032991_0.557|GO:0005737_0.550
|
IPR001163+16-84_17-84+|IPR010920+11-85+|IPR033871+6-90_11-86+|IPR047575+13-88+
|
SM00651+16-84+
|
PF01423+17-84+LSM_domain
|
G3DSA:2.30.30.100:FF:000003+13-88+U6_snRNA-associated_Sm-like_protein_LSm5
|
PTHR20971+6-90+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-91
|
8rm5_65
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
10018.660
|
4.309
|
-5.500
|
25.275
|
5.495
|
42.857
|
57.143
|
9.890
|
15.385
|
52.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
490.481
|
258.910
|
343.243
|
492.906
|
569.524
|
439.264
|
566.008
|
365.635
|
553.759
|
592.227
|
575.741
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.792
|
0.633
|
0.176
|
-0.359
|
0.376
|
-0.370
|
0.773
|
— | — | — | — | — |
No JSON data available for plots.