Hg_chrom6_TN10mRNA_11885
Organism: Heterodera glycines Gene Locus: chr6:4533780-4541913 Feature type: polypeptideProtein Sequence
Length: 1,411
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.56 | 1.714 | 0.631 | 0.342 | 1.63 | 1.308 | 0.481 | 0.673 | 1.591 | 1.494 | 1.654 | 1.417 | 1.713 | 0.382 | 0.795 | 0.871 | 0.871 | 0.483 | 1.308 | 0.938 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11211
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKRK,KKYFTAENESERKKAA,RKKLLQYFDEIKLKKG,KKEVKLMGNAEKQRKL,KKNDQRKRKKVYKKSQK
|
— | — | — | — |
1-19
|
0.996
|
1.000
|
0.000
|
0.000
|
0.608
|
0.155
|
0.006
|
0.615
|
0.087
|
0.091
|
0.129
|
0.031
|
0.073
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010385
|
1.000
|
1.000
|
Hsc_gene_7503.t1
|
Hsc_gene_7503.t1;Hsc_gene_7504.t1
|
— |
P29468.1 Poly(A) polymerase [Saccharomyces cerevisiae S288C]
|
KAF7635929.1 PAP_central domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.763|GO:0110165_0.763|GO:0005622_0.709|GO:0016020_0.683|GO:0043226_0.657|GO:0043229_0.638|GO:0008150_0.622|GO:0043227_0.601|GO:0043231_0.574|GO:0003674_0.531|GO:0009987_0.521
|
IPR007012+1134-1274+|IPR043519+953-1108_979-1123+|IPR048840+985-1123+
|
— |
PF04928+1134-1274+Poly(A)_polymerase_central_domain|PF20750+985-1123+Poly(A)_polymerase_nucleotidyltransferase_domain
|
— |
PTHR10682+956-1360+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
546-704
|
2.000
|
1-545;705-1411
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
165442.320
|
9.223
|
31.500
|
29.412
|
12.403
|
53.296
|
46.704
|
16.159
|
13.253
|
37.279
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
784.136
|
37.640
|
109.755
|
92.635
|
24.770
|
7.243
|
23.299
|
15.401
|
2453.120
|
1474.227
|
1893.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.313
|
1.163
|
— |
-1.940
|
-1.756
|
1.691
|
0.985
|
0.736
|
— |
-4.586
|
-5.779
|
— | — |