Hg_chrom6_TN10mRNA_11887
Organism: Heterodera glycines Gene Locus: chr6:4549257-4552409 Feature type: polypeptideProtein Sequence
Length: 488
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.263 | 0.905 | 1.08 | 0.919 | 0.649 | 0.631 | 0.707 | 0.717 | 1.275 | 1.052 | 0.776 | 1.567 | 1.708 | 1.222 | 1.046 | 1.376 | 0.873 | 0.931 | 0.158 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11213
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
11-31
|
0.928
|
— | — |
0.000
|
— | — |
0.100
|
0.750
|
0.336
|
0.279
|
0.029
|
0.053
|
0.087
|
0.048
|
0.047
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010387
|
1.000
|
1.000
|
Hsc_gene_7501.t1
|
Hsc_gene_7501.t1
|
— |
A8WTJ7.1 Hydroxyacid-oxoacid transhydrogenase, mitochondrial [Caenorhabditis briggsae]
|
KAF7633897.1 Fe-ADH domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004022|GO:0016491|GO:0046872
|
GO:0003674_0.719|GO:0005575_0.671|GO:0110165_0.659|GO:0008150_0.601|GO:0003824_0.592|GO:0005622_0.575|GO:0016491_0.520|GO:0005737_0.501
|
IPR001670+73-474+|IPR018211+241-269+|IPR039697+67-485+|IPR042157+71-485+
|
— |
PF00465+73-474+Iron-containing_alcohol_dehydrogenase
|
G3DSA:1.20.1090.10:FF:000003+253-484+Probable_hydroxyacid-oxoacid_transhydrogenase,_mitochondrial|G3DSA:3.40.50.1970:FF:000003+64-252+Alcohol_dehydrogenase,_iron-containing
|
PTHR11496+67-485+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-488
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
52948.660
|
7.692
|
5.500
|
21.516
|
10.451
|
42.828
|
57.172
|
11.680
|
9.836
|
56.762
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
steelblue
|
1153.511
|
452.541
|
1435.654
|
960.636
|
1162.878
|
1763.921
|
1428.607
|
2925.637
|
421.277
|
931.949
|
713.090
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.438
|
0.949
|
-0.472
|
0.243
|
0.616
|
-0.295
|
0.623
|
-0.892
|
— | — | — | — | — |
No JSON data available for plots.