Hg_chrom6_TN10mRNA_11889
Organism: Heterodera glycines Gene Locus: chr6:4559015-4560393 Feature type: polypeptideProtein Sequence
Length: 310
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.575 | 0.762 | 2.113 | 1.774 | 0.744 | 1.037 | 0.806 | 1.362 | 1.133 | 0.831 | 1.139 | 1.613 | 0.31 | 1.185 | 1.06 | 0.582 | 0.44 | 0.993 | 0.664 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11215
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.991
|
1.000
|
0.000
|
0.000
|
0.264
|
0.306
|
0.026
|
0.248
|
0.191
|
0.147
|
0.158
|
0.044
|
0.254
|
0.913
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010388
|
1.000
|
1.000
|
Hsc_gene_7500.t1
|
Hsc_gene_7500.t1
|
— | — |
KAF7638449.1 hypothetical protein Mgra_00002126 [Meloidogyne graminicola]
|
MBP7783680
|
0.480
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005179|GO:0005576
|
GO:0008150_0.947|GO:0005575_0.923|GO:0110165_0.923|GO:0065007_0.858|GO:0050789_0.850|GO:0051179_0.780|GO:0006810_0.769|GO:0051234_0.769|GO:0048519_0.746|GO:0032879_0.714|GO:0051049_0.701|GO:0006811_0.685|GO:0006812_0.681|GO:0051051_0.681|GO:0030001_0.680|GO:0043269_0.676|GO:0006816_0.674|GO:0010959_0.674|GO:0043271_0.670|GO:0051924_0.670|GO:0051926_0.670|GO:0005576_0.628|GO:0005615_0.609
|
IPR004978+129-264_130-278+
|
— |
PF03298+129-264+Stanniocalcin_family|PF23003+22-90+Fibronectin_type_I_domain
|
— |
PTHR11245+130-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
275-310
|
1.000
|
1-274
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
34830.310
|
4.868
|
-8.500
|
27.742
|
10.968
|
48.387
|
51.613
|
12.903
|
14.839
|
47.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
498.885
|
15.475
|
30.747
|
583.114
|
1131.786
|
1487.548
|
632.341
|
109.740
|
0.000
|
686.091
|
392.052
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
5.101
|
4.350
|
0.925
|
0.409
|
-1.224
|
-3.861
|
2.668
|
-23.752
|
10.045
|
— | — |
8.200
|