Hg_chrom6_TN10mRNA_11890
Organism: Heterodera glycines Gene Locus: chr6:4571402-4573681 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.605 | 1.21 | 1.204 | 0.652 | 0.788 | 1.212 | 0.704 | 1.773 | 1.156 | 1.406 | 0.716 | 1.53 | 1.839 | 0.773 | 1.496 | 0.912 | 0.543 | 1.003 | 1.273 | 0.973 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11216
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.750
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRVIGCYFGWDTVKSRVR
|
1-21
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.183
|
0.875
|
0.021
|
0.268
|
0.024
|
0.057
|
0.029
|
0.285
|
0.038
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010389
|
1.000
|
1.000
|
Hsc_gene_7497.t1
|
Hsc_gene_7497.t1;Hsc_gene_7498.t1
|
— |
Q19000.1 Probable gamma-butyrobetaine dioxygenase [Caenorhabditis elegans]
|
KAI1714236.1 taurine catabolism dioxygenase tauD, tfdA family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.880|GO:0003824_0.785|GO:0008150_0.716|GO:0005575_0.683|GO:0110165_0.681|GO:0016491_0.672|GO:0016705_0.657|GO:0016706_0.650|GO:0051213_0.650|GO:0009987_0.646|GO:0005622_0.621|GO:0008152_0.598|GO:0016020_0.595|GO:0005737_0.575|GO:0043226_0.567|GO:0044237_0.566|GO:0009058_0.560|GO:0043227_0.536
|
IPR003819+156-397+|IPR038492+6-104+|IPR042098+114-417+|IPR050411+68-401+
|
— |
PF02668+156-397+Taurine_catabolism_dioxygenase_TauD,_TfdA_family
|
— |
PTHR10696+68-401+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
48987.080
|
8.121
|
10.500
|
26.950
|
15.130
|
46.572
|
53.428
|
15.603
|
11.348
|
45.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
magenta
|
53.796
|
22.279
|
56.385
|
41.144
|
68.561
|
190.306
|
101.931
|
111.923
|
1.028
|
12.387
|
7.519
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.111
|
0.747
|
— |
0.703
|
1.489
|
-0.890
|
-0.865
|
— | — |
5.228
|
— | — | — |
No JSON data available for plots.